Rh6DG125400

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
17680066 .. 17684719
4654 bp
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UTR
Exon/CDS
Intron
Rh6DG125400.1

Sequence Viewer

Length: 336 bp
ATGTGTGATGAGAAAAGAGAAAGGAAGTCTGATTTTGAGAACTCCGAGGATGAGCGGAGGACTAGAATTGGGACTCTGAAGAAGAAGGCCATAAATGCGTCTACTAAATTTAAGCACTCTCTCAAGAAAAAGGGTAGTAGAAGAAAAAGTGATGGCAGAGTCAGCTCTGTTTCTATTGAAGATGTTCGGGATGTTGAAGAGCTACAGGCTGTTGATGCATTTCGACAATCACTAATTTTGGATGAATTGCTGCCGGACAAACACGATGACTATCATATGATGTTGAGGTACTCAGTTTTTTTACTTTGGATTAATATTCATGCGTACACATACTGA

Protein Analysis

111

Amino Acids

13.16

Weight (kDa)

9.01

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021173)

Species Orthologous Gene IDs
malus_domestica MD02G1140900.v1.1
prunus_persica Prupe.7G244800_v2.0.a1
pyrus_communis pycom05g05410
rosa_roxburghii Rroxscaffold_7G00202410
rosa_samantha Rh6DG125400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 101
AciI CCGC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 2 cut(s) 290, 326
AgsI TTSAA 2 cut(s) 179, 197
AluBI AGCT 2 cut(s) 165, 202
AluI AGCT 2 cut(s) 165, 202
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 107
AseI ATTAAT 1 cut(s) 312
Asp700I GAANNNNTTC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 146
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
BmsI GCATC 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 55, 196, 247
BseJI GATNNNNATC 1 cut(s) 270
BseMII CTCAG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 89
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 305
BspQI GCTCTTC 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 292
BstF5I GGATG 3 cut(s) 55, 196, 247
BstMWI GCNNNNNNNGC 3 cut(s) 95, 162, 215
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 3 cut(s) 55, 196, 247
CseI GACGC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 289, 325
CviAII CATG 1 cut(s) 320
CviJI RGCY 4 cut(s) 89, 165, 202, 209
CviKI_1 RGCY 4 cut(s) 89, 165, 202, 209
CviQI GTAC 2 cut(s) 289, 325
DdeI CTNAG 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 1 cut(s) 323
FaiI YATR 5 cut(s) 92, 276, 278, 321, 331
FaqI GGGAC 1 cut(s) 85
FatI CATG 1 cut(s) 319
FauNDI CATATG 1 cut(s) 276
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 3 cut(s) 62, 203, 254
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 323
HinfI GANTC 2 cut(s) 73, 159
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 102, 327
Hpy188I TCNGA 3 cut(s) 31, 46, 78
Hpy188III TCNNGA 2 cut(s) 124, 188
Hpy8I GTNNAC 2 cut(s) 102, 327
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 162, 215
HpyF3I CTNAG 1 cut(s) 292
Hsp92II CATG 1 cut(s) 323
LguI GCTCTTC 1 cut(s) 192
LpnPI CCDG 2 cut(s) 191, 267
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 55
MboII GAAGA 5 cut(s) 91, 94, 153, 191, 209
MluCI AATT 4 cut(s) 66, 107, 234, 245
MlyI GAGTC 2 cut(s) 67, 168
MnlI CCTC 3 cut(s) 40, 51, 279
Mph1103I ATGCAT 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 2 cut(s) 111, 312
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 95, 162, 215
NdeI CATATG 1 cut(s) 276
NlaIII CATG 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 252
PleI GAGTC 2 cut(s) 67, 167
PpsI GAGTC 2 cut(s) 67, 167
PshBI ATTAAT 1 cut(s) 312
RsaI GTAC 2 cut(s) 290, 326
RsaNI GTAC 2 cut(s) 289, 325
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 111, 312
SatI GCNGC 1 cut(s) 251
SchI GAGTC 2 cut(s) 67, 168
SetI ASST 3 cut(s) 167, 204, 290
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 203
SgeI CNNG 8 cut(s) 58, 75, 136, 200, 218, 266, 275, 332
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 66, 107, 234, 245
SsiI CCGC 1 cut(s) 55
SspI AATATT 1 cut(s) 316
SspMI CTAG 1 cut(s) 63
TaqI TCGA 1 cut(s) 223
TasI AATT 4 cut(s) 66, 107, 234, 245
Tru1I TTAA 2 cut(s) 111, 312
Tru9I TTAA 2 cut(s) 111, 312
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 258, 308
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.