Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0021173

Physical Location & Seq

Genomic Coordinates Forward (+)

6499220 .. 6500424

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCGGGCCCGCTGGATCGGTTCGCCAGGCCTTGTTTTGAAGGGTTTTATGGTAGTGATGAGAGGAGGGAGAGGAAGTCTGATTTTGAGAATTCAGAGGATGAGCGGAGGACTAGAATTGGAACTCTGAAGAAGAAGGCGCTAAATGCATCTACCAAATTTAAACATTCTCTCAAGAAAAAGGGTGGTAGGAGAAAGAGTGATGGCCGAGTCAGCTCTGTTTCCATTGAAGACGTTCGTGATATTGAAGAGCTGCAGGCTGTTGATGCATTTCGACAAGCACTGATTTTGGATGAATTGCTCCCAGAAAAGCATGACGATTATCATATGATGTTGAGGTTTTTGAAAGCAAGGAAGTTTGATCGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

124

Amino Acids

14.42

Weight (kDa)

9.58

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021173)

Species	Orthologous Gene IDs
malus_domestica	MD02G1140900.v1.1
prunus_persica	Prupe.7G244800_v2.0.a1
pyrus_communis	pycom05g05410
rosa_roxburghii	Rroxscaffold_7G00202410
rosa_samantha	Rh6DG125400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	2 cut(s)	11, 106
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	91, 158
AcuI	CTGAAG	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	41, 230, 248, 346
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	216, 253
AluI	AGCT	2 cut(s)	216, 253
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	3 cut(s)	7, 29, 205
ApaI	GGGCCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	91, 158
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	7, 8
BaeGI	GKGCMC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	28
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	7, 8
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	2 cut(s)	158, 256
BpiI	GAAGAC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	364
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 184, 214
BseBI	CCWGG	1 cut(s)	28
BseCI	ATCGAT	1 cut(s)	364
BseGI	GGATG	2 cut(s)	106, 298
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	240
BshFI	GGCC	3 cut(s)	9, 31, 207
BshVI	ATCGAT	1 cut(s)	364
BsnI	GGCC	3 cut(s)	9, 31, 207
Bsp120I	GGGCCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	16, 361, 365
BspACI	CCGC	2 cut(s)	11, 106
BspANI	GGCC	3 cut(s)	9, 31, 207
BspDI	ATCGAT	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	106
BssMI	GATC	3 cut(s)	16, 361, 365
Bst2UI	CCWGG	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	11, 258
BstF5I	GGATG	2 cut(s)	106, 298
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	3 cut(s)	19, 364, 368
BstMBI	GATC	3 cut(s)	16, 361, 365
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 213, 266
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	9, 31, 207
BsuTUI	ATCGAT	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	106, 298
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	2 cut(s)	11, 258
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	7, 8
ClaI	ATCGAT	1 cut(s)	364
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	6 cut(s)	9, 31, 207, 216, 253, 260
CviKI_1	RGCY	6 cut(s)	9, 31, 207, 216, 253, 260
DpnI	GATC	3 cut(s)	18, 363, 367
DpnII	GATC	3 cut(s)	16, 361, 365
DraI	TTTAAA	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	26
EcoT22I	ATGCAT	2 cut(s)	151, 271
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	1 cut(s)	317
FaiI	YATR	4 cut(s)	51, 315, 327, 329
FatI	CATG	1 cut(s)	313
FauI	CCCGC	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	2 cut(s)	113, 305
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	9, 31, 207
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	82, 97, 129
Hpy188III	TCNNGA	3 cut(s)	175, 239, 369
HpyAV	CCTTC	2 cut(s)	35, 130
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	149, 256, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 213, 266
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	3 cut(s)	16, 361, 365
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	4 cut(s)	13, 40, 242, 318
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	2 cut(s)	158, 256
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	234
MalI	GATC	3 cut(s)	18, 363, 367
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	3 cut(s)	16, 361, 365
MboII	GAAGA	4 cut(s)	142, 145, 242, 260
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	91, 117, 158, 296
MlyI	GAGTC	1 cut(s)	219
MnlI	CCTC	6 cut(s)	57, 60, 66, 91, 102, 330
Mph1103I	ATGCAT	2 cut(s)	151, 271
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	146, 213, 266
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	3 cut(s)	16, 361, 365
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	233
NsiI	ATGCAT	2 cut(s)	151, 271
PceI	AGGCCT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	9
PspOMI	GGGCCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	7, 8
PstI	CTGCAG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	3 cut(s)	16, 361, 365
Sau96I	GGNCC	2 cut(s)	7, 8
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	4 cut(s)	218, 237, 255, 341
SfaNI	GCATC	2 cut(s)	158, 256
SfcI	CTRYAG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	91, 117, 158, 296
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	11, 106
SspMI	CTAG	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	274, 364
TasI	AATT	4 cut(s)	91, 117, 158, 296
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	288
XapI	RAATTY	2 cut(s)	91, 158
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	2 cut(s)	151, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.