Rroxscaffold_7G00202410

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
50444972 .. 50452641
7670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202410.1

Sequence Viewer

Length: 414 bp
ATGGAGGAGACTCGACGGGTCAATGAAGCCATTCCTCTCGGTGACTTATTTGATTTCGCTTATCCGTTTGAATCGCGTCGAGACAGAGAAATGAAGAAAGACGAGGAGATATTTCTTGTATTTTTGCTTCAGCTTTTCTTTACAACTTTCTGCAATTCTGCTTCCGCCATACAGCTCTCGCATTTCTCCCTGGAAGAAAACTCCGAGGAGGAAAGGAAAACAAGGCTTGGGTCTCTTAAGCAGAAGGCAATTAATGCCTCCACCAAGTTTAGGCATTCGTTTACAAAGAAGGGTCGAAGGAACAGTAAGGTAATGCTCCATCCTATTGGTGACAACATTAATGCGGAGGAATTACAGGCAGTGGACGCATTCCGCCAAGCACTTATCTTGAAGAACTATTGCCTCAAAACATGA

Protein Analysis

137

Amino Acids

16.0

Weight (kDa)

8.58

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021173)

Species Orthologous Gene IDs
malus_domestica MD02G1140900.v1.1
prunus_persica Prupe.7G244800_v2.0.a1
pyrus_communis pycom05g05410
rosa_roxburghii Rroxscaffold_7G00202410
rosa_samantha Rh6DG125400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 76
AciI CCGC 3 cut(s) 165, 344, 373
AcuI CTGAAG 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 270
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 2 cut(s) 71, 391
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 133, 175
AluI AGCT 2 cut(s) 133, 175
Alw26I GTCTC 3 cut(s) 2, 75, 237
AseI ATTAAT 2 cut(s) 252, 339
Asp700I GAANNNNTTC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 53, 341
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BccI CCATC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 3 cut(s) 2, 75, 237
BfrI CTTAAG 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 189, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 189, 204
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 270
BseRI GAGGAG 3 cut(s) 20, 119, 221
Bsh1236I CGCG 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 3 cut(s) 2, 75, 237
BsmI GAATGC 2 cut(s) 274, 368
Bso31I GGTCTC 1 cut(s) 237
BspACI CCGC 3 cut(s) 165, 344, 373
BspFNI CGCG 1 cut(s) 76
BspTI CTTAAG 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 189, 204
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 305
BstAFI CTTAAG 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 254
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 76
BstMAI GTCTC 3 cut(s) 2, 75, 237
BstMWI GCNNNNNNNGC 2 cut(s) 254, 365
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 366
CseI GACGC 2 cut(s) 65, 374
CviAII CATG 1 cut(s) 411
CviJI RGCY 4 cut(s) 29, 133, 175, 226
CviKI_1 RGCY 4 cut(s) 29, 133, 175, 226
EciI GGCGGA 2 cut(s) 154, 362
Eco31I GGTCTC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 414
FaiI YATR 2 cut(s) 170, 412
FatI CATG 1 cut(s) 410
FokI GGATG 1 cut(s) 306
HgaI GACGC 2 cut(s) 65, 374
Hin1II CATG 1 cut(s) 414
HinfI GANTC 2 cut(s) 10, 71
HphI GGTGA 2 cut(s) 53, 341
Hpy166II GTNNAC 2 cut(s) 282, 364
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 80, 388
Hpy8I GTNNAC 2 cut(s) 282, 364
Hpy99I CGWCG 2 cut(s) 18, 81
HpyAV CCTTC 3 cut(s) 238, 283, 291
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 365
Hsp92II CATG 1 cut(s) 414
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 3 cut(s) 176, 203, 341
MaeIII GTNAC 2 cut(s) 41, 329
MboII GAAGA 3 cut(s) 106, 206, 403
MluCI AATT 3 cut(s) 154, 249, 350
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 7 cut(s) 45, 97, 199, 202, 268, 340, 413
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 237, 252, 339
MspCI CTTAAG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 191
Mva1269I GAATGC 2 cut(s) 274, 368
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 254, 365
NlaIII CATG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 41, 329
PctI GAATGC 2 cut(s) 274, 368
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 71
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PshBI ATTAAT 2 cut(s) 252, 339
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
SaqAI TTAA 3 cut(s) 237, 252, 339
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 191
SetI ASST 3 cut(s) 135, 177, 312
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 154, 249, 350
SsiI CCGC 3 cut(s) 165, 344, 373
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 3 cut(s) 13, 79, 295
TasI AATT 3 cut(s) 154, 249, 350
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 237, 252, 339
Tru9I TTAA 3 cut(s) 237, 252, 339
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 2 cut(s) 41, 329
Tsp45I GTSAC 2 cut(s) 41, 329
TspDTI ATGAA 2 cut(s) 39, 107
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 366
Vha464I CTTAAG 1 cut(s) 236
VspI ATTAAT 2 cut(s) 252, 339
XmnI GAANNNNTTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.