MD02G1269800.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
32457259 .. 32460779
3521 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1269800.v1.1.491

Sequence Viewer

Length: 1845 bp
ATGATTCTATCACAAGAACAGATTTTGCTAACTTTTTATTTCCCCCAATACCCCATTTCTCCACCTTCTCTATCCTCTTTCTCAGTGGGATACAGAACCAAGATGGACTCGAGTTCATTTATCGGAACCAACCAGAAAGTCATAGAAGAAGAGGTTGAGAGGAAAACGGAGGAGTATCGTAGCAAAGAGGAGATCACCATGATATCTAACATGTGTAAAAGATTGAATGTGAGAGAAGATTTCCGGTCACTATTTCTTACAACATGGAGATTACCTGCTGTTGAATTCAACATGAAGGTGGTTGCTGGTCCCTCTTCGAAGATGGTTGCTGTAGAGGCTGCGATAAGATTAGGAGCAACATGGGTAATTCTTGATAGGCAGATGAAGAAAGAGAAGCAATTCTTCATGGAGAAGTTGCCATGTGGTATATCGAGGATGAAACGTAATTCTGTTGAACAATTGAGAGGGCCAAAAGCAATTGGGAACATCAGCAAACCAGTCGCCAAAAGACCCAGTAAAAGCTCCCATATAAGATATGATGAAATGATACCAGGAAACCCAGAGGAAGGAATTTCTCCTAAAAAATCTCCGAGTCCTCGCACTAGCAGTTTTGGAAAGGAACAAGATGGTTGTGGAGACCCGTGGTCTAACTATAGGAAATCTACATCAACAAGTGATCTGTATCTTGCAAGTAGAGTGTCAACTTCAACTCTGGGGAATACTGACCTATTTAATCCTGGTTTTGCCCGTAATTATGATGAGGAAGAAAGCTCAACAAATGCTGAAAGAGGAAAAGCAGGAAAGCGGTCCCCATTTCCACTTGCAGAGATTCAAGCAAGGGATCAAAAGGAAACACATAATGCTGGGAGTCCCGATGAACAGAAACAGCATAGCTACAAGGACGATTGGATAGGAGAATGTCGAATAGATGAAGAATTTAAAAATTCAGTATGCACGGGTTGCAAGAATAAACGGCCCACTATTGGATGGAAGAGAGACTTTACCTATGCAGACCTCCTAGCTGCTACGGATGGGTTTTCCGACAATAATTTCCTGTCTGAAGGTGGATTTGGTTCCGTCTACAGAGGAGAACTTAATGGGCTTAAGATTGCTGTTAAGCAGCATAAGAAAGCAAGCTGCCAAGGCGAGAAAGAATTTGAGTCTGAAGTTCATGTACTCAGTAAGGCAAGACATGAGAATTTGGTAATGCTGTTAGGATCATGCTCAGAGGGAAGCAAGAGGCTGCTTGTTTACGAATATGTTTGCAATGGTTCGTTGGATCATCATCTATCGAAACACAACAGAAGACCTCTCGGTTGGGATAAGAAGATAAAAATTGCTACTGGAGCTGCAAAAGGCTTACTATACCTGCATCAAAACAACATCATCCACAGAGATGTGAGACCGAACAACATCCTCGTGACACACGATCATGAAGCACTGCTAGGAGATTTTGGTCTTGCAAGAACTCAACATGAAGACTCAGATCGATCATCAGATACAACGAGAGTTGTCGGAACTCTGGGATATTTGGCACCAGAATATGCCGAAAATGGGAAAGTGTCAACTAAGACAGATGTTTATGCTTTCGGGGTCATTCTATTACAGCTCATCACAGGGCTGAGGTCTACTGACAAGAGGCTTGGAGGAAAAAGTCTTGTGGGATGGGCAAGACCACTTTTAAAAGAAAGGAACTACCCAGATTTAATCGATCCGAGGAATGTGGATTGCCATGATGTTCACCAGCTCTATTGGATGGTTCGGGTAGCTGAAAAATGTCTCAGCAGGGATCCACACAACAGATTAACTATGGATGCTGTAAGTCCACCTGATAGTAGACTCTGA

Protein Analysis

615

Amino Acids

69.3

Weight (kDa)

8.92

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 349 - 606 8e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 351 - 605 1.9e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 283, 1377
AccB1I GGYRCC 1 cut(s) 1534
AccI GTMKAC 3 cut(s) 1080, 1628, 1837
AciI CCGC 1 cut(s) 805
AclWI GGATC 6 cut(s) 849, 1225, 1287, 1706, 1784, 1797
AcsI RAATTY 6 cut(s) 284, 570, 935, 943, 1154, 1198
AcuI CTGAAG 2 cut(s) 1080, 1185
AfaI GTAC 1 cut(s) 1176
AfiI CCNNNNNNNGG 3 cut(s) 566, 983, 1554
AflII CTTAAG 1 cut(s) 1103
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 6 cut(s) 226, 284, 289, 455, 708, 833
AhdI GACNNNNNGTC 1 cut(s) 643
AjnI CCWGG 2 cut(s) 550, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 1053, 1085
AluBI AGCT 9 cut(s) 522, 771, 894, 1022, 1137, 1349, 1609, 1747, 1769
AluI AGCT 9 cut(s) 522, 771, 894, 1022, 1137, 1349, 1609, 1747, 1769
Alw26I GTCTC 4 cut(s) 630, 990, 1396, 1784
AlwI GGATC 6 cut(s) 849, 1225, 1287, 1706, 1784, 1797
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 2 cut(s) 467, 974
ApeKI GCWGC 6 cut(s) 338, 1022, 1120, 1137, 1243, 1349
ApoI RAATTY 6 cut(s) 284, 570, 935, 943, 1154, 1198
Asp700I GAANNNNTTC 1 cut(s) 398
AspS9I GGNCC 4 cut(s) 308, 467, 807, 975
AsuHPI GGTGA 2 cut(s) 187, 1733
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 2 cut(s) 308, 807
BamHI GGATCC 1 cut(s) 1789
BanI GGYRCC 1 cut(s) 1534
BarI GAAGNNNNNNTAC 2 cut(s) 1158, 1190
BauI CACGAG 1 cut(s) 1418
BbsI GAAGAC 2 cut(s) 1312, 1485
BbvCI CCTCAGC 1 cut(s) 1622
BbvI GCAGC 6 cut(s) 325, 1009, 1124, 1132, 1230, 1336
BccI CCATC 7 cut(s) 97, 316, 620, 981, 1025, 1659, 1750
BceAI ACGGC 1 cut(s) 989
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 2 cut(s) 552, 738
BciVI GTATCC 1 cut(s) 83
BcoDI GTCTC 4 cut(s) 630, 990, 1396, 1784
BfaI CTAG 3 cut(s) 603, 1019, 1445
BfmI CTRYAG 3 cut(s) 330, 652, 1081
BfrI CTTAAG 1 cut(s) 1103
BfuAI ACCTGC 2 cut(s) 283, 1377
BfuI GTATCC 1 cut(s) 83
BisI GCNGC 6 cut(s) 339, 1023, 1121, 1138, 1244, 1350
BlsI GCNGC 6 cut(s) 340, 1024, 1122, 1139, 1245, 1351
Bme1390I CCNGG 2 cut(s) 552, 738
Bme18I GGWCC 2 cut(s) 308, 807
BmeRI GACNNNNNGTC 1 cut(s) 643
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 4 cut(s) 308, 467, 807, 975
BmiI GGNNCC 6 cut(s) 127, 310, 809, 1075, 1536, 1791
BmrFI CCNGG 2 cut(s) 552, 738
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 2 cut(s) 1381, 1804
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 2 cut(s) 1312, 1485
BpmI CTGGAG 1 cut(s) 1365
Bpu10I CCTNAGC 1 cut(s) 1622
Bpu14I TTCGAA 1 cut(s) 317
Bsa29I ATCGAT 2 cut(s) 1489, 1710
BsaBI GATNNNNATC 2 cut(s) 681, 1284
BsaI GGTCTC 2 cut(s) 630, 1396
BsaJI CCNNGG 3 cut(s) 641, 1141, 1715
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 3 cut(s) 566, 983, 1554
Bse1I ACTGG 3 cut(s) 497, 513, 1348
Bse3DI GCAATG 1 cut(s) 1273
Bse8I GATNNNNATC 2 cut(s) 681, 1284
BseBI CCWGG 2 cut(s) 552, 738
BseCI ATCGAT 2 cut(s) 1489, 1710
BseDI CCNNGG 3 cut(s) 641, 1141, 1715
BseGI GGATG 8 cut(s) 441, 992, 1036, 1386, 1413, 1670, 1761, 1819
BseJI GATNNNNATC 2 cut(s) 681, 1284
BseLI CCNNNNNNNGG 3 cut(s) 566, 983, 1554
BseMI GCAATG 1 cut(s) 1273
BseMII CTCAG 6 cut(s) 96, 1192, 1239, 1497, 1613, 1795
BseNI ACTGG 3 cut(s) 497, 513, 1348
BseRI GAGGAG 3 cut(s) 185, 203, 1101
BseXI GCAGC 6 cut(s) 325, 1009, 1124, 1132, 1230, 1336
BseYI CCCAGC 1 cut(s) 863
BshFI GGCC 2 cut(s) 469, 976
BshNI GGYRCC 1 cut(s) 1534
BshVI ATCGAT 2 cut(s) 1489, 1710
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 1 cut(s) 244
BslFI GGGAC 3 cut(s) 294, 793, 855
BslI CCNNNNNNNGG 3 cut(s) 566, 983, 1554
BsmAI GTCTC 4 cut(s) 630, 990, 1396, 1784
BsmFI GGGAC 3 cut(s) 294, 793, 855
BsnI GGCC 2 cut(s) 469, 976
Bso31I GGTCTC 2 cut(s) 630, 1396
BsoBI CYCGRG 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 317
BspACI CCGC 1 cut(s) 805
BspANI GGCC 2 cut(s) 469, 976
BspCNI CTCAG 6 cut(s) 95, 1191, 1238, 1496, 1614, 1794
BspDI ATCGAT 2 cut(s) 1489, 1710
BspHI TCATGA 1 cut(s) 1432
BspLI GGNNCC 6 cut(s) 127, 310, 809, 1075, 1536, 1791
BspMI ACCTGC 2 cut(s) 283, 1377
BspPI GGATC 6 cut(s) 849, 1225, 1287, 1706, 1784, 1797
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 1534
BspTI CTTAAG 1 cut(s) 1103
BspTNI GGTCTC 2 cut(s) 630, 1396
BsrDI GCAATG 1 cut(s) 1273
BsrI ACTGG 3 cut(s) 497, 513, 1348
BssECI CCNNGG 3 cut(s) 641, 1141, 1715
BssSI CACGAG 1 cut(s) 1418
BssT1I CCWWGG 1 cut(s) 1141
Bst2BI CACGAG 1 cut(s) 1418
Bst2UI CCWGG 2 cut(s) 552, 738
Bst6I CTCTTC 3 cut(s) 144, 319, 986
BstAFI CTTAAG 1 cut(s) 1103
BstAPI GCANNNNNTGC 1 cut(s) 960
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 1135
BstDEI CTNAG 7 cut(s) 82, 1178, 1225, 1483, 1569, 1622, 1781
BstDSI CCRYGG 1 cut(s) 641
BstF5I GGATG 8 cut(s) 441, 992, 1036, 1386, 1413, 1670, 1761, 1819
BstMAI GTCTC 4 cut(s) 630, 990, 1396, 1784
BstMWI GCNNNNNNNGC 4 cut(s) 335, 960, 1143, 1346
BstNI CCWGG 2 cut(s) 552, 738
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 550, 736
BstSFI CTRYAG 3 cut(s) 330, 652, 1081
BstV1I GCAGC 6 cut(s) 325, 1009, 1124, 1132, 1230, 1336
BstV2I GAAGAC 2 cut(s) 1312, 1485
BstX2I RGATCY 1 cut(s) 1789
BstYI RGATCY 1 cut(s) 1789
Bsu15I ATCGAT 2 cut(s) 1489, 1710
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 2 cut(s) 469, 976
BsuTUI ATCGAT 2 cut(s) 1489, 1710
BtgI CCRYGG 1 cut(s) 641
BtsCI GGATG 8 cut(s) 441, 992, 1036, 1386, 1413, 1670, 1761, 1819
BtsI GCAGTG 1 cut(s) 1439
BtsIMutI CAGTG 2 cut(s) 90, 1439
BveI ACCTGC 2 cut(s) 283, 1377
Cac8I GCNNGC 1 cut(s) 1135
CciI TCATGA 1 cut(s) 1432
Cfr13I GGNCC 4 cut(s) 308, 467, 807, 975
ClaI ATCGAT 2 cut(s) 1489, 1710
Csp6I GTAC 1 cut(s) 1175
CviQI GTAC 1 cut(s) 1175
DdeI CTNAG 7 cut(s) 82, 1178, 1225, 1483, 1569, 1622, 1781
DraI TTTAAA 2 cut(s) 940, 1683
DriI GACNNNNNGTC 1 cut(s) 643
Eam1104I CTCTTC 3 cut(s) 144, 319, 986
Eam1105I GACNNNNNGTC 1 cut(s) 643
EarI CTCTTC 3 cut(s) 144, 319, 986
Eco130I CCWWGG 1 cut(s) 1141
Eco31I GGTCTC 2 cut(s) 630, 1396
Eco32I GATATC 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 308, 807
Eco57I CTGAAG 2 cut(s) 1080, 1185
Eco88I CYCGRG 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 550, 736
EcoRV GATATC 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 1141
ErhI CCWWGG 1 cut(s) 1141
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 983, 1015
FaqI GGGAC 3 cut(s) 294, 793, 855
FblI GTMKAC 3 cut(s) 1080, 1628, 1837
Fnu4HI GCNGC 6 cut(s) 339, 1023, 1121, 1138, 1244, 1350
FokI GGATG 8 cut(s) 448, 999, 1043, 1373, 1400, 1677, 1768, 1826
Fsp4HI GCNGC 6 cut(s) 339, 1023, 1121, 1138, 1244, 1350
FspBI CTAG 3 cut(s) 603, 1019, 1445
GluI GCNGC 6 cut(s) 339, 1023, 1121, 1138, 1244, 1350
GsaI CCCAGC 1 cut(s) 867
GsuI CTGGAG 1 cut(s) 1365
HaeIII GGCC 2 cut(s) 469, 976
HapII CCGG 1 cut(s) 244
HincII GTYRAC 2 cut(s) 702, 1566
HindII GTYRAC 2 cut(s) 702, 1566
HinfI GANTC 8 cut(s) 4, 107, 592, 829, 868, 1160, 1481, 1839
HpaII CCGG 1 cut(s) 244
HphI GGTGA 2 cut(s) 187, 1733
Hpy166II GTNNAC 8 cut(s) 702, 1081, 1252, 1566, 1629, 1741, 1826, 1838
Hpy188III TCNNGA 4 cut(s) 371, 872, 1420, 1433
Hpy8I GTNNAC 8 cut(s) 702, 1081, 1252, 1566, 1629, 1741, 1826, 1838
HpyAV CCTTC 4 cut(s) 75, 289, 560, 1055
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 9 cut(s) 689, 824, 954, 963, 1010, 1266, 1352, 1372, 1463
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 960, 1143, 1346
HpyF3I CTNAG 7 cut(s) 82, 1178, 1225, 1483, 1569, 1622, 1781
HpySE526I ACGT 1 cut(s) 442
LmnI GCTCC 3 cut(s) 353, 527, 1346
Lsp1109I GCAGC 6 cut(s) 325, 1009, 1124, 1132, 1230, 1336
LweI GCATC 2 cut(s) 1381, 1804
MaeI CTAG 3 cut(s) 603, 1019, 1445
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 2 cut(s) 246, 1420
MfeI CAATTG 2 cut(s) 458, 477
MflI RGATCY 1 cut(s) 1789
MlyI GAGTC 6 cut(s) 101, 601, 877, 1169, 1475, 1833
MmeI TCCRAC 3 cut(s) 1065, 1257, 1495
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 8 cut(s) 732, 939, 1095, 1104, 1116, 1682, 1706, 1805
MslI CAYNNNNRTG 4 cut(s) 296, 1395, 1418, 1431
MspCI CTTAAG 1 cut(s) 1103
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 2 cut(s) 552, 738
MunI CAATTG 2 cut(s) 458, 477
MvaI CCWGG 2 cut(s) 552, 738
MwoI GCNNNNNNNGC 4 cut(s) 335, 960, 1143, 1346
NlaIV GGNNCC 6 cut(s) 127, 310, 809, 1075, 1536, 1791
NmuCI GTSAC 2 cut(s) 246, 1420
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 109
PagI TCATGA 1 cut(s) 1432
PciI ACATGT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 1425
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 4, 829
PkrI GCNGC 6 cut(s) 340, 1024, 1122, 1139, 1245, 1351
PleI GAGTC 6 cut(s) 101, 600, 876, 1168, 1475, 1833
PpsI GAGTC 6 cut(s) 101, 600, 876, 1168, 1475, 1833
PscI ACATGT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 550, 736
PspFI CCCAGC 1 cut(s) 863
PspGI CCWGG 2 cut(s) 550, 736
PspN4I GGNNCC 6 cut(s) 127, 310, 809, 1075, 1536, 1791
PspPI GGNCC 4 cut(s) 308, 467, 807, 975
PspXI VCTCGAGB 1 cut(s) 109
PsuI RGATCY 1 cut(s) 1789
RsaI GTAC 1 cut(s) 1176
RsaNI GTAC 1 cut(s) 1175
RseI CAYNNNNRTG 4 cut(s) 296, 1395, 1418, 1431
SaqAI TTAA 8 cut(s) 732, 939, 1095, 1104, 1116, 1682, 1706, 1805
SatI GCNGC 6 cut(s) 339, 1023, 1121, 1138, 1244, 1350
Sau96I GGNCC 4 cut(s) 308, 467, 807, 975
SchI GAGTC 6 cut(s) 101, 601, 877, 1169, 1475, 1833
ScrFI CCNGG 2 cut(s) 552, 738
SfaNI GCATC 2 cut(s) 1381, 1804
SfcI CTRYAG 3 cut(s) 330, 652, 1081
Sfr274I CTCGAG 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 2 cut(s) 308, 807
SlaI CTCGAG 1 cut(s) 109
SmiMI CAYNNNNRTG 4 cut(s) 296, 1395, 1418, 1431
SmlI CTYRAG 2 cut(s) 109, 1103
SmoI CTYRAG 2 cut(s) 109, 1103
SsiI CCGC 1 cut(s) 805
SspMI CTAG 3 cut(s) 603, 1019, 1445
StyD4I CCNGG 2 cut(s) 550, 736
StyI CCWWGG 1 cut(s) 1141
TaiI ACGT 1 cut(s) 445
TaqI TCGA 7 cut(s) 110, 317, 431, 922, 1292, 1489, 1710
TaqII GACCGA 1 cut(s) 1420
TatI WGTACW 1 cut(s) 1174
TfiI GAWTC 2 cut(s) 4, 829
Tru1I TTAA 8 cut(s) 732, 939, 1095, 1104, 1116, 1682, 1706, 1805
Tru9I TTAA 8 cut(s) 732, 939, 1095, 1104, 1116, 1682, 1706, 1805
TscAI CASTG 2 cut(s) 90, 1446
TseFI GTSAC 2 cut(s) 246, 1420
TseI GCWGC 6 cut(s) 338, 1022, 1120, 1137, 1243, 1349
Tsp45I GTSAC 2 cut(s) 246, 1420
TspGWI ACGGA 3 cut(s) 182, 1043, 1066
TspRI CASTG 2 cut(s) 90, 1446
Vha464I CTTAAG 1 cut(s) 1103
VpaK11BI GGWCC 2 cut(s) 308, 807
XapI RAATTY 6 cut(s) 284, 570, 935, 943, 1154, 1198
XceI RCATGY 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 109
XmiI GTMKAC 3 cut(s) 1080, 1628, 1837
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 3 cut(s) 603, 1019, 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.