Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014788

Physical Location & Seq

Genomic Coordinates Forward (+)

8743105 .. 8745820

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1084900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATTGGATGGAAGAGAGACTTTACGTATGCAGATCTCGTAGCTGCTACGGATGGATTTTCCGACAAGAACTACTTGTCTGAAGGCGGATTTGGTTCCGTCTACAGAGGAGAACTTAATGGGCTGAAGATTGCTGTTAAGCAACATAAGAATGCAAGCTGCCAAGGAGAAAAAGAATTTGAGTCTGAAGTTCATGTACTCAGCAAGGCAAGACATGAGAATTTGGTAATGCTGTTAGGATCATGCTCAGAAGGAAGCAAGAGGCTGCTTGTTTACGAATATGTTTGCAATGGTTCATTGGATAAACATCTGTCGAAACACAGAAAAAGACCTCTCAGTTGGGATAAGAAGATAAAAATTGCTACTGGAGCTGCAAAAGGCCTACTATACCTGCATCAAAACAACATCATCCATAGAGATGTGAGACCAAACAACATCCTCGTGACACACGATTATGAATCACTGCTAGGAGATTTTGGTCTTGCGAGAACTCAACACGAAGACTCAGATCGATCATCAGATACAACGAGAGTTGTCGGAACTCTGGGATATTTGGCCCCAGAATATGCGGAAAATGGGAAAGTGTCAACTAAGACAGATGTTTATGCTTTCGGGGTCATTCTATTACAGCTTATCACAGGACTGAGGCCTACTGACAAGAAGCTTGAAGGAAAAAGTCTTGTGGGATGGGCAAGACCACTGCTAAAAGAAAGGAACTACCCAGATTTAATCGATCCGAGGAATGTGGATTGCCATGATGTTCACCAGCTCTATTGGATGGTTCGGGTAGCCGAAAAATGTCTCAGCAGGGATCCACACAAGAGATTACCTATGGATAGTGTGGTGAATGCTTTGACTTACTTGAACGATGCCAACCCAGTTTGTAGCATTGGAGACTTTTCACCAGCACAATCTGAGTCAGCGGGAAGCATTCCGGGATCTTCTGAATCGCATGCTACTGATTATATTAGCATAGAAATTACTCCCACCATAGACTACATGCAACATCCCACCTCTACTATTTCTTCAGAAACAGAAGGGTCTAGCTCTTTCACTGTCTCTGTGAATTCCCCCTCGGGTACTAGTTCTGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

366

Amino Acids

40.46

Weight (kDa)

6.28

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 283	1.9e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 284	1.2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014788)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04460
malus_domestica	MD02G1269800.v1.1 MD07G1084900.v1.1
prunus_persica	Prupe.2G050000_v2.0.a1 Prupe.2G050000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329671
rosa_laevigata	RLG00000029871
rosa_multiflora	Rmu_sc0004219.1_g000006 Rmu_sc0004805.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320790
rosa_rugosa	Rorug01G0081900
rosa_samantha	Rh1AG100400 Rh1BG079600 Rh1CG096000 Rh1DG102200
rosa_wichuraiana	Rw1G007810 Rw1G007930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	3 cut(s)	87, 569, 923
AclWI	GGATC	5 cut(s)	247, 728, 806, 819, 946
AcsI	RAATTY	3 cut(s)	176, 220, 1066
AcuI	CTGAAG	4 cut(s)	102, 146, 207, 1011
AfaI	GTAC	3 cut(s)	198, 1081, 1094
AgsI	TTSAA	2 cut(s)	668, 865
AhlI	ACTAGT	1 cut(s)	1082
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	7 cut(s)	44, 159, 371, 631, 664, 769, 1047
AluI	AGCT	7 cut(s)	44, 159, 371, 631, 664, 769, 1047
Alw26I	GTCTC	5 cut(s)	12, 418, 806, 888, 1063
AlwI	GGATC	5 cut(s)	247, 728, 806, 819, 946
Ama87I	CYCGRG	1 cut(s)	1075
AoxI	GGCC	3 cut(s)	379, 555, 647
ApeKI	GCWGC	4 cut(s)	44, 159, 265, 371
ApoI	RAATTY	3 cut(s)	176, 220, 1066
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	936
AsuHPI	GGTGA	3 cut(s)	755, 856, 894
AvaI	CYCGRG	1 cut(s)	1075
BamHI	GGATCC	1 cut(s)	811
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BauI	CACGAG	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	4 cut(s)	31, 146, 252, 358
BccI	CCATC	4 cut(s)	3, 47, 681, 772
BcnI	CCSGG	1 cut(s)	936
BcoDI	GTCTC	5 cut(s)	12, 418, 806, 888, 1063
BcuI	ACTAGT	1 cut(s)	1082
BfaI	CTAG	3 cut(s)	467, 1044, 1083
BfmI	CTRYAG	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	399
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	4 cut(s)	45, 160, 266, 372
BlsI	GCNGC	4 cut(s)	46, 161, 267, 373
BmcAI	AGTACT	1 cut(s)	1094
Bme1390I	CCNGG	1 cut(s)	936
BmeT110I	CYCGRG	1 cut(s)	1075
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	3 cut(s)	97, 558, 813
BmrFI	CCNGG	1 cut(s)	936
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	2 cut(s)	403, 859
BmuI	ACTGGG	1 cut(s)	872
BpiI	GAAGAC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	936
Bsa29I	ATCGAT	2 cut(s)	511, 732
BsaAI	YACGTR	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	163, 737, 1074
Bse1I	ACTGG	2 cut(s)	370, 878
Bse3DI	GCAATG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	306
BseCI	ATCGAT	2 cut(s)	511, 732
BseDI	CCNNGG	3 cut(s)	163, 737, 1074
BseGI	GGATG	7 cut(s)	14, 58, 408, 435, 692, 783, 1006
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	8 cut(s)	214, 261, 349, 519, 635, 817, 906, 1080
BseNI	ACTGG	2 cut(s)	370, 878
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	4 cut(s)	31, 146, 252, 358
BshFI	GGCC	3 cut(s)	381, 557, 649
BshVI	ATCGAT	2 cut(s)	511, 732
BsiHKCI	CYCGRG	1 cut(s)	1075
BsiSI	CCGG	1 cut(s)	935
BsmAI	GTCTC	5 cut(s)	12, 418, 806, 888, 1063
BsmI	GAATGC	3 cut(s)	157, 853, 930
BsnI	GGCC	3 cut(s)	381, 557, 649
Bso31I	GGTCTC	1 cut(s)	418
BsoBI	CYCGRG	1 cut(s)	1075
Bsp143I	GATC	7 cut(s)	34, 239, 508, 512, 733, 811, 938
BspACI	CCGC	3 cut(s)	87, 569, 923
BspANI	GGCC	3 cut(s)	381, 557, 649
BspCNI	CTCAG	8 cut(s)	213, 260, 348, 518, 636, 816, 907, 1081
BspDI	ATCGAT	2 cut(s)	511, 732
BspLI	GGNNCC	3 cut(s)	97, 558, 813
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	5 cut(s)	247, 728, 806, 819, 946
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	370, 878
BssECI	CCNNGG	3 cut(s)	163, 737, 1074
BssMI	GATC	7 cut(s)	34, 239, 508, 512, 733, 811, 938
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	1057
Bst6I	CTCTTC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	157, 954
BstDEI	CTNAG	9 cut(s)	200, 247, 335, 505, 591, 644, 803, 915, 1089
BstF5I	GGATG	7 cut(s)	14, 58, 408, 435, 692, 783, 1006
BstKTI	GATC	7 cut(s)	37, 242, 511, 515, 736, 814, 941
BstMAI	GTCTC	5 cut(s)	12, 418, 806, 888, 1063
BstMBI	GATC	7 cut(s)	34, 239, 508, 512, 733, 811, 938
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	2 cut(s)	956, 1003
BstSCI	CCNGG	1 cut(s)	934
BstSFI	CTRYAG	1 cut(s)	103
BstSNI	TACGTA	1 cut(s)	27
BstV1I	GCAGC	4 cut(s)	31, 146, 252, 358
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	3 cut(s)	34, 811, 938
BstYI	RGATCY	3 cut(s)	34, 811, 938
Bsu15I	ATCGAT	2 cut(s)	511, 732
BsuRI	GGCC	3 cut(s)	381, 557, 649
BsuTUI	ATCGAT	2 cut(s)	511, 732
BtsCI	GGATG	7 cut(s)	14, 58, 408, 435, 692, 783, 1006
BtsI	GCAGTG	2 cut(s)	461, 698
BtsIMutI	CAGTG	3 cut(s)	461, 698, 1053
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	157, 954
Cfr13I	GGNCC	1 cut(s)	556
ClaI	ATCGAT	2 cut(s)	511, 732
Csp6I	GTAC	3 cut(s)	197, 1080, 1093
CviAII	CATG	6 cut(s)	194, 215, 243, 755, 953, 1000
CviQI	GTAC	3 cut(s)	197, 1080, 1093
DdeI	CTNAG	9 cut(s)	200, 247, 335, 505, 591, 644, 803, 915, 1089
DpnI	GATC	7 cut(s)	36, 241, 510, 514, 735, 813, 940
DpnII	GATC	7 cut(s)	34, 239, 508, 512, 733, 811, 938
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	102
Eco105I	TACGTA	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	2 cut(s)	381, 649
Eco31I	GGTCTC	1 cut(s)	418
Eco57I	CTGAAG	4 cut(s)	102, 146, 207, 1011
Eco88I	CYCGRG	1 cut(s)	1075
EcoRI	GAATTC	1 cut(s)	1066
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	6 cut(s)	197, 218, 246, 758, 956, 1003
FalI	AAGNNNNNCTT	3 cut(s)	37, 59, 91
FatI	CATG	6 cut(s)	193, 214, 242, 754, 952, 999
FauI	CCCGC	1 cut(s)	916
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	45, 160, 266, 372
FokI	GGATG	7 cut(s)	21, 65, 395, 422, 699, 790, 993
Fsp4HI	GCNGC	4 cut(s)	45, 160, 266, 372
FspBI	CTAG	3 cut(s)	467, 1044, 1083
GluI	GCNGC	4 cut(s)	45, 160, 266, 372
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	381, 557, 649
HapII	CCGG	1 cut(s)	935
Hin1II	CATG	6 cut(s)	197, 218, 246, 758, 956, 1003
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	5 cut(s)	182, 458, 503, 917, 947
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	3 cut(s)	755, 856, 894
Hpy166II	GTNNAC	4 cut(s)	103, 274, 588, 763
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	4 cut(s)	103, 274, 588, 763
HpyAV	CCTTC	4 cut(s)	77, 245, 662, 1031
HpyCH4III	ACNGT	1 cut(s)	1057
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	6 cut(s)	32, 155, 288, 374, 394, 1003
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	9 cut(s)	200, 247, 335, 505, 591, 644, 803, 915, 1089
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	6 cut(s)	197, 218, 246, 758, 956, 1003
Kzo9I	GATC	7 cut(s)	34, 239, 508, 512, 733, 811, 938
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	4 cut(s)	31, 146, 252, 358
LweI	GCATC	2 cut(s)	403, 859
MaeI	CTAG	3 cut(s)	467, 1044, 1083
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	7 cut(s)	36, 241, 510, 514, 735, 813, 940
MboI	GATC	7 cut(s)	34, 239, 508, 512, 733, 811, 938
MboII	GAAGA	6 cut(s)	25, 139, 361, 512, 933, 1017
MflI	RGATCY	3 cut(s)	34, 811, 938
MluCI	AATT	5 cut(s)	176, 220, 357, 978, 1066
MlyI	GAGTC	3 cut(s)	191, 497, 926
MmeI	TCCRAC	2 cut(s)	87, 517
MnlI	CCTC	8 cut(s)	101, 255, 342, 449, 639, 732, 1024, 1084
MseI	TTAA	3 cut(s)	117, 138, 728
MslI	CAYNNNNRTG	4 cut(s)	150, 417, 440, 453
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	935
MspR9I	CCNGG	1 cut(s)	936
Mva1269I	GAATGC	3 cut(s)	157, 853, 930
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	1 cut(s)	936
NdeII	GATC	7 cut(s)	34, 239, 508, 512, 733, 811, 938
NlaIII	CATG	6 cut(s)	197, 218, 246, 758, 956, 1003
NlaIV	GGNNCC	3 cut(s)	97, 558, 813
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	2 cut(s)	956, 1003
PaeI	GCATGC	1 cut(s)	956
PceI	AGGCCT	2 cut(s)	381, 649
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PctI	GAATGC	3 cut(s)	157, 853, 930
PfeI	GAWTC	2 cut(s)	458, 947
PfoI	TCCNGGA	1 cut(s)	934
PkrI	GCNGC	4 cut(s)	46, 161, 267, 373
PleI	GAGTC	3 cut(s)	190, 497, 925
PpsI	GAGTC	3 cut(s)	190, 497, 925
Ppu21I	YACGTR	1 cut(s)	27
PspN4I	GGNNCC	3 cut(s)	97, 558, 813
PspPI	GGNCC	1 cut(s)	556
PsuI	RGATCY	3 cut(s)	34, 811, 938
RsaI	GTAC	3 cut(s)	198, 1081, 1094
RsaNI	GTAC	3 cut(s)	197, 1080, 1093
RseI	CAYNNNNRTG	4 cut(s)	150, 417, 440, 453
SaqAI	TTAA	3 cut(s)	117, 138, 728
SatI	GCNGC	4 cut(s)	45, 160, 266, 372
Sau3AI	GATC	7 cut(s)	34, 239, 508, 512, 733, 811, 938
Sau96I	GGNCC	1 cut(s)	556
ScaI	AGTACT	1 cut(s)	1094
SchI	GAGTC	3 cut(s)	191, 497, 926
ScrFI	CCNGG	1 cut(s)	936
SfaNI	GCATC	2 cut(s)	403, 859
SfcI	CTRYAG	1 cut(s)	103
SmiMI	CAYNNNNRTG	4 cut(s)	150, 417, 440, 453
SnaBI	TACGTA	1 cut(s)	27
SpeI	ACTAGT	1 cut(s)	1082
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	5 cut(s)	176, 220, 357, 978, 1066
SseBI	AGGCCT	2 cut(s)	381, 649
SsiI	CCGC	3 cut(s)	87, 569, 923
SspMI	CTAG	3 cut(s)	467, 1044, 1083
StuI	AGGCCT	2 cut(s)	381, 649
StyD4I	CCNGG	1 cut(s)	934
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	1057
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	3 cut(s)	314, 511, 732
TasI	AATT	5 cut(s)	176, 220, 357, 978, 1066
TatI	WGTACW	2 cut(s)	196, 1092
TfiI	GAWTC	2 cut(s)	458, 947
Tru1I	TTAA	3 cut(s)	117, 138, 728
Tru9I	TTAA	3 cut(s)	117, 138, 728
TscAI	CASTG	3 cut(s)	468, 705, 1060
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	4 cut(s)	44, 159, 265, 371
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	182, 285, 471
TspGWI	ACGGA	2 cut(s)	65, 88
TspRI	CASTG	3 cut(s)	468, 705, 1060
XapI	RAATTY	3 cut(s)	176, 220, 1066
XceI	RCATGY	2 cut(s)	956, 1003
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	3 cut(s)	467, 1044, 1083
ZrmI	AGTACT	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.