Rh1CG096000

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
20590678 .. 20596221
5544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG096000.1

Sequence Viewer

Length: 1530 bp
ATGGATTCCAGTTCATTTTTTGGAACAAACCAGAAAGTCATTCAAGAAGAGATTGAGAGGAAAACGGAGGAGTATCATAACAAAGTGGAAATTACAATGATTTCTCAGATATGTAAATGCGCAGAGATTAAGTTCCACATGGAAGTACTCGCTGGCCCGTCTCCAAAGATGGTTGCTGCAGATGCTGCCAAAGGATTAGGAGCAACGTGGGTTATTCTTGATAGGCAAATGAAGAAAGACAAGCAATTCTTCATGGAGAATTTGACATGTGGTATATCGAGGGTGAAGCGTAACAACTCTGTTGAACAACTGAGAGGCCCAAAACCAATTGAGAACAGCAAGCCAGCAGCTGAAAGGCGCACCACCAGGAGACGTATCAAAGAACAAGTAAAATATGATGAAATGATACCCGGAGATGAAGAACTCTCTCCTAAAAAAACTCCAAGTCTTCCAAATATCAGTAATGGCAAAGAACAAGATGCTGATGTTCGCGGACACCCATGGCTTAATTATGGGAAATCTGCTTCCTCATCAAATGAGCAGCCGACAACTTCAAGCCTTGGGACTACTGAAGCCTTACCTTCTGTTCTTGCTGGTCATTTTCAAGAGGTAGAAATCACTACAAATACTGGAAGAGGAAAAGCAGAAGTCCCTCCTCCAATTGCAAGGGTTCAAGCGAGGGATCAAAAGGAAACAGATAACGCTGGGAGCCCAGATGAATCTAAACAGCACAGCTACAAGAATGATTGGATAGGAGAATGTCAAGCAGATGAGGAATTTAAAAATTCAACCTGCACAGTTTGCAATAATCAACGACCAAAGATCGGATGGAAGAGAGACTTTACTTATGCAGAACTCCAAGCTGCTACTGATGGTTTTTCCACAAAGAACTTCCTATCTGAAGGTGGATTTGGTTCAGTCTACAAAGGAGAACTGAATGGGGTGAAGATTGCTGTAAAGCAACATAAAAATGCAAGCTTCCAAGGAGAGAAAGAATTTAAGTCTGAAGTTCATGTACTCAGCAAAGCAAGACATGAAAATTTGGTTATGCTGTTAGGATCATGTTCAGAAGGAAGACAGAGGCTCCTTGTTTACGAATATGTTTGCAACGGTTCTTTGGATCAACATTTATCAACACATAACACCAGGCCTCTCAGTTGGGATAAGAAGATAAAAATCGCTACTGGAGCTGCAAAAGGGTTAAAATATCTGCATGAGAACAACATCATCCATAGGGACGTGAGACCAAACAACGTCCTCGTGTCACATGATTATGAATCCCTGCTAGGAGATTTTGGTCTTGCAAGAACTCAACATGAAGACTCGGATCGATCAACAGACACAACAACAGTTGTCGGAACTTTGGGATATTTGGCACCAGAATATGCAGAAAGTGGGAAAGTGTCAACCAAGACAGATGTTTATGCTTTCGGGGTCATTCTATTACAGCTTATCACAGGAATGAGGCCTACAGACAAGAAGCTTGGAGGGAAAAGTCTTGTGGGATGGGTAAGAGCTTCCATATTGTAA

Protein Analysis

509

Amino Acids

56.67

Weight (kDa)

8.41

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 295 - 493 2.3e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 296 - 492 7.5e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 800
AccB1I GGYRCC 1 cut(s) 1375
AccI GTMKAC 1 cut(s) 921
AccII CGCG 1 cut(s) 492
AciI CCGC 1 cut(s) 492
AclWI GGATC 4 cut(s) 690, 1066, 1128, 1335
AcsI RAATTY 5 cut(s) 259, 776, 784, 995, 1039
AcuI CTGAAG 3 cut(s) 591, 921, 1026
AfaI GTAC 2 cut(s) 147, 1017
AfiI CCNNNNNNNGG 1 cut(s) 824
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 6 cut(s) 44, 305, 555, 605, 674, 789
AjiI CACGTC 1 cut(s) 1240
AjnI CCWGG 2 cut(s) 365, 1145
AjuI GAANNNNNNNTTGG 2 cut(s) 894, 926
AluBI AGCT 8 cut(s) 350, 735, 863, 978, 1190, 1450, 1483, 1517
AluI AGCT 8 cut(s) 350, 735, 863, 978, 1190, 1450, 1483, 1517
Alw26I GTCTC 4 cut(s) 165, 364, 831, 1237
AlwI GGATC 4 cut(s) 690, 1066, 1128, 1335
AlwNI CAGNNNCTG 2 cut(s) 185, 350
AoxI GGCC 4 cut(s) 154, 316, 1148, 1466
ApeKI GCWGC 6 cut(s) 176, 185, 347, 541, 863, 1190
ApoI RAATTY 5 cut(s) 259, 776, 784, 995, 1039
AspLEI GCGC 2 cut(s) 122, 360
AspS9I GGNCC 2 cut(s) 155, 317
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 295, 955
BanI GGYRCC 1 cut(s) 1375
BanII GRGCYC 1 cut(s) 713
BarI GAAGNNNNNNTAC 2 cut(s) 999, 1031
BauI CACGAG 1 cut(s) 1259
BbsI GAAGAC 3 cut(s) 440, 1081, 1326
BbvI GCAGC 6 cut(s) 163, 172, 359, 553, 850, 1177
BccI CCATC 4 cut(s) 163, 822, 866, 1500
BciT130I CCWGG 2 cut(s) 367, 1147
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 4 cut(s) 165, 364, 831, 1237
BfaI CTAG 1 cut(s) 1286
BfmI CTRYAG 2 cut(s) 177, 1470
BfuAI ACCTGC 1 cut(s) 800
BisI GCNGC 6 cut(s) 177, 186, 348, 542, 864, 1191
BlsI GCNGC 6 cut(s) 178, 187, 349, 543, 865, 1192
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 3 cut(s) 367, 411, 1147
BmgBI CACGTC 1 cut(s) 1240
BmgT120I GGNCC 2 cut(s) 155, 317
BmiI GGNNCC 3 cut(s) 710, 1085, 1377
BmrFI CCNGG 3 cut(s) 367, 411, 1147
BmsI GCATC 2 cut(s) 172, 469
BpiI GAAGAC 3 cut(s) 440, 1081, 1326
BpmI CTGGAG 1 cut(s) 1206
BpuMI CCSGG 1 cut(s) 411
Bsa29I ATCGAT 1 cut(s) 1330
BsaBI GATNNNNATC 1 cut(s) 1175
BsaI GGTCTC 1 cut(s) 1237
BsaJI CCNNGG 3 cut(s) 500, 559, 982
BsaXI ACNNNNNCTCC 2 cut(s) 1068, 1098
Bsc4I CCNNNNNNNGG 1 cut(s) 824
Bse1I ACTGG 3 cut(s) 9, 634, 1189
Bse8I GATNNNNATC 1 cut(s) 1175
BseBI CCWGG 2 cut(s) 367, 1147
BseCI ATCGAT 1 cut(s) 1330
BseDI CCNNGG 3 cut(s) 500, 559, 982
BseGI GGATG 3 cut(s) 833, 1227, 1511
BseJI GATNNNNATC 1 cut(s) 1175
BseLI CCNNNNNNNGG 1 cut(s) 824
BseMII CTCAG 4 cut(s) 119, 302, 1033, 1168
BseNI ACTGG 3 cut(s) 9, 634, 1189
BseRI GAGGAG 2 cut(s) 83, 645
BseXI GCAGC 6 cut(s) 163, 172, 359, 553, 850, 1177
BseYI CCCAGC 1 cut(s) 704
BsgI GTGCAG 1 cut(s) 778
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 4 cut(s) 156, 318, 1150, 1468
BshNI GGYRCC 1 cut(s) 1375
BshVI ATCGAT 1 cut(s) 1330
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 3 cut(s) 577, 635, 1250
BslI CCNNNNNNNGG 1 cut(s) 824
BsmAI GTCTC 4 cut(s) 165, 364, 831, 1237
BsmBI CGTCTC 2 cut(s) 165, 364
BsmFI GGGAC 3 cut(s) 577, 635, 1250
BsnI GGCC 4 cut(s) 156, 318, 1150, 1468
Bso31I GGTCTC 1 cut(s) 1237
Bsp1286I GDGCHC 1 cut(s) 713
Bsp143I GATC 6 cut(s) 682, 822, 1058, 1120, 1327, 1331
Bsp19I CCATGG 1 cut(s) 500
BspACI CCGC 1 cut(s) 492
BspANI GGCC 4 cut(s) 156, 318, 1150, 1468
BspCNI CTCAG 4 cut(s) 118, 303, 1032, 1167
BspDI ATCGAT 1 cut(s) 1330
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 710, 1085, 1377
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 800
BspPI GGATC 4 cut(s) 690, 1066, 1128, 1335
BspT107I GGYRCC 1 cut(s) 1375
BspTNI GGTCTC 1 cut(s) 1237
BsrI ACTGG 3 cut(s) 9, 634, 1189
BssECI CCNNGG 3 cut(s) 500, 559, 982
BssMI GATC 6 cut(s) 682, 822, 1058, 1120, 1327, 1331
BssSI CACGAG 1 cut(s) 1259
BssT1I CCWWGG 3 cut(s) 500, 559, 982
Bst2BI CACGAG 1 cut(s) 1259
Bst2UI CCWGG 2 cut(s) 367, 1147
Bst4CI ACNGT 3 cut(s) 799, 1112, 1351
Bst6I CTCTTC 3 cut(s) 42, 628, 827
BstAPI GCANNNNNTGC 2 cut(s) 185, 801
BstC8I GCNNGC 4 cut(s) 154, 341, 345, 976
BstDEI CTNAG 4 cut(s) 105, 311, 1019, 1154
BstDSI CCRYGG 1 cut(s) 500
BstF5I GGATG 3 cut(s) 833, 1227, 1511
BstFNI CGCG 1 cut(s) 492
BstHHI GCGC 2 cut(s) 122, 360
BstKTI GATC 6 cut(s) 685, 825, 1061, 1123, 1330, 1334
BstMAI GTCTC 4 cut(s) 165, 364, 831, 1237
BstMBI GATC 6 cut(s) 682, 822, 1058, 1120, 1327, 1331
BstMWI GCNNNNNNNGC 4 cut(s) 182, 185, 801, 1187
BstNI CCWGG 2 cut(s) 367, 1147
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 3 cut(s) 365, 409, 1145
BstSFI CTRYAG 2 cut(s) 177, 1470
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 6 cut(s) 163, 172, 359, 553, 850, 1177
BstV2I GAAGAC 3 cut(s) 440, 1081, 1326
Bsu15I ATCGAT 1 cut(s) 1330
BsuRI GGCC 4 cut(s) 156, 318, 1150, 1468
BsuTUI ATCGAT 1 cut(s) 1330
BtgI CCRYGG 1 cut(s) 500
BtrI CACGTC 1 cut(s) 1240
BtsCI GGATG 3 cut(s) 833, 1227, 1511
BveI ACCTGC 1 cut(s) 800
Cac8I GCNNGC 4 cut(s) 154, 341, 345, 976
CaiI CAGNNNCTG 2 cut(s) 185, 350
CfoI GCGC 2 cut(s) 122, 360
Cfr13I GGNCC 2 cut(s) 155, 317
ClaI ATCGAT 1 cut(s) 1330
Csp6I GTAC 2 cut(s) 146, 1016
CviQI GTAC 2 cut(s) 146, 1016
DdeI CTNAG 4 cut(s) 105, 311, 1019, 1154
DpnI GATC 6 cut(s) 684, 824, 1060, 1122, 1329, 1333
DpnII GATC 6 cut(s) 682, 822, 1058, 1120, 1327, 1331
DraI TTTAAA 1 cut(s) 781
Eam1104I CTCTTC 3 cut(s) 42, 628, 827
EarI CTCTTC 3 cut(s) 42, 628, 827
Eco130I CCWWGG 3 cut(s) 500, 559, 982
Eco147I AGGCCT 2 cut(s) 1150, 1468
Eco24I GRGCYC 1 cut(s) 713
Eco31I GGTCTC 1 cut(s) 1237
Eco57I CTGAAG 3 cut(s) 591, 921, 1026
EcoRII CCWGG 2 cut(s) 365, 1145
EcoT14I CCWWGG 3 cut(s) 500, 559, 982
EcoT38I GRGCYC 1 cut(s) 713
ErhI CCWWGG 3 cut(s) 500, 559, 982
Esp3I CGTCTC 2 cut(s) 165, 364
FalI AAGNNNNNCTT 4 cut(s) 233, 265, 824, 856
FaqI GGGAC 3 cut(s) 577, 635, 1250
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 6 cut(s) 177, 186, 348, 542, 864, 1191
FokI GGATG 3 cut(s) 840, 1214, 1518
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 6 cut(s) 177, 186, 348, 542, 864, 1191
FspBI CTAG 1 cut(s) 1286
FspI TGCGCA 1 cut(s) 121
GlaI GCGC 2 cut(s) 121, 359
GluI GCNGC 6 cut(s) 177, 186, 348, 542, 864, 1191
GsaI CCCAGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 1206
HaeIII GGCC 4 cut(s) 156, 318, 1150, 1468
HapII CCGG 1 cut(s) 411
HhaI GCGC 2 cut(s) 122, 360
Hin6I GCGC 2 cut(s) 120, 358
HinP1I GCGC 2 cut(s) 120, 358
HincII GTYRAC 1 cut(s) 1407
HindII GTYRAC 1 cut(s) 1407
HindIII AAGCTT 2 cut(s) 976, 1481
HinfI GANTC 4 cut(s) 5, 719, 1277, 1322
HpaII CCGG 1 cut(s) 411
HphI GGTGA 2 cut(s) 295, 955
Hpy166II GTNNAC 3 cut(s) 922, 1093, 1407
Hpy188I TCNGA 7 cut(s) 108, 827, 901, 1006, 1069, 1327, 1358
Hpy188III TCNNGA 3 cut(s) 44, 218, 605
Hpy8I GTNNAC 3 cut(s) 922, 1093, 1407
HpyAV CCTTC 3 cut(s) 591, 896, 1064
HpyCH4III ACNGT 3 cut(s) 799, 1112, 1351
HpyCH4IV ACGT 4 cut(s) 206, 373, 1239, 1254
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 185, 801, 1187
HpyF3I CTNAG 4 cut(s) 105, 311, 1019, 1154
HpySE526I ACGT 4 cut(s) 206, 373, 1239, 1254
HspAI GCGC 2 cut(s) 120, 358
Kzo9I GATC 6 cut(s) 682, 822, 1058, 1120, 1327, 1331
LmnI GCTCC 4 cut(s) 200, 708, 1089, 1187
Lsp1109I GCAGC 6 cut(s) 163, 172, 359, 553, 850, 1177
LweI GCATC 2 cut(s) 172, 469
MaeI CTAG 1 cut(s) 1286
MaeII ACGT 4 cut(s) 206, 373, 1239, 1254
MaeIII GTNAC 2 cut(s) 290, 1263
MalI GATC 6 cut(s) 684, 824, 1060, 1122, 1329, 1333
MboI GATC 6 cut(s) 682, 822, 1058, 1120, 1327, 1331
MfeI CAATTG 2 cut(s) 327, 660
MhlI GDGCHC 1 cut(s) 713
MlyI GAGTC 1 cut(s) 1316
MmeI TCCRAC 1 cut(s) 1336
MseI TTAA 5 cut(s) 129, 507, 780, 999, 1202
MslI CAYNNNNRTG 3 cut(s) 969, 1272, 1460
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 3 cut(s) 367, 411, 1147
MunI CAATTG 2 cut(s) 327, 660
MvaI CCWGG 2 cut(s) 367, 1147
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 4 cut(s) 182, 185, 801, 1187
NciI CCSGG 1 cut(s) 411
NcoI CCATGG 1 cut(s) 500
NdeII GATC 6 cut(s) 682, 822, 1058, 1120, 1327, 1331
NlaIV GGNNCC 3 cut(s) 710, 1085, 1377
NmuCI GTSAC 1 cut(s) 1263
NsbI TGCGCA 1 cut(s) 121
NspI RCATGY 1 cut(s) 270
PceI AGGCCT 2 cut(s) 1150, 1468
PciI ACATGT 1 cut(s) 266
PfeI GAWTC 3 cut(s) 5, 719, 1277
PkrI GCNGC 6 cut(s) 178, 187, 349, 543, 865, 1192
PleI GAGTC 1 cut(s) 1316
PpsI GAGTC 1 cut(s) 1316
PscI ACATGT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 365, 1145
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 2 cut(s) 365, 1145
PspN4I GGNNCC 3 cut(s) 710, 1085, 1377
PspPI GGNCC 2 cut(s) 155, 317
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 2 cut(s) 185, 350
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 2 cut(s) 147, 1017
RsaNI GTAC 2 cut(s) 146, 1016
RseI CAYNNNNRTG 3 cut(s) 969, 1272, 1460
SaqAI TTAA 5 cut(s) 129, 507, 780, 999, 1202
SatI GCNGC 6 cut(s) 177, 186, 348, 542, 864, 1191
Sau3AI GATC 6 cut(s) 682, 822, 1058, 1120, 1327, 1331
Sau96I GGNCC 2 cut(s) 155, 317
ScaI AGTACT 1 cut(s) 147
SchI GAGTC 1 cut(s) 1316
ScrFI CCNGG 3 cut(s) 367, 411, 1147
SduI GDGCHC 1 cut(s) 713
SfaNI GCATC 2 cut(s) 172, 469
SfcI CTRYAG 2 cut(s) 177, 1470
SmiMI CAYNNNNRTG 3 cut(s) 969, 1272, 1460
SseBI AGGCCT 2 cut(s) 1150, 1468
SsiI CCGC 1 cut(s) 492
SspMI CTAG 1 cut(s) 1286
StuI AGGCCT 2 cut(s) 1150, 1468
StyD4I CCNGG 3 cut(s) 365, 409, 1145
StyI CCWWGG 3 cut(s) 500, 559, 982
TaaI ACNGT 3 cut(s) 799, 1112, 1351
TaiI ACGT 4 cut(s) 209, 376, 1242, 1257
TaqI TCGA 2 cut(s) 278, 1330
TatI WGTACW 2 cut(s) 145, 1015
TfiI GAWTC 3 cut(s) 5, 719, 1277
Tru1I TTAA 5 cut(s) 129, 507, 780, 999, 1202
Tru9I TTAA 5 cut(s) 129, 507, 780, 999, 1202
TseFI GTSAC 1 cut(s) 1263
TseI GCWGC 6 cut(s) 176, 185, 347, 541, 863, 1190
Tsp45I GTSAC 1 cut(s) 1263
TspDTI ATGAA 9 cut(s) 241, 245, 414, 432, 732, 1001, 1050, 1290, 1332
TspGWI ACGGA 1 cut(s) 80
XapI RAATTY 5 cut(s) 259, 776, 784, 995, 1039
XceI RCATGY 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmiI GTMKAC 1 cut(s) 921
XspI CTAG 1 cut(s) 1286
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.