RchiOBHm_Chr1g0329671

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
19416623 .. 19420600
3978 bp
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UTR
Exon/CDS
Intron
PRQ55894

Sequence Viewer

Length: 1692 bp
ATGACAGCAGAAGCTCAGAAAATAGTGGTGATCCAGGATGCATCTAAAGACATCGTTAGTTCGAGCACAATTCAATTAGTCCTGCATGGCTTATCACATAAGCCTGGGGATGAACTTACACTTCTTGCAGTTCTTCACCAGATTAAGTTCCACATGGAAGTACTCGCTGGCCCGTCTCCAAAGATGGTTGCTGCAGATGCTGCCAAAGGATTAGGAGCAACGTGGGTTATTCTTGATAGGCAAATGAAGAAAGACAAGCAATTCTTCATGGAGAATTTGACATGTGGTATATCGAGGGTGAAGCGTAACAACTCTGTTGAACAACTGAGAGGCCCAAAACCAATTGAGAACAGCAAGCCAGCAGCTGAAAGGCGCACCACCAGGAGACGTATCAAAGAACAAGTAAAATATGATGAAATGATACCCGGAGATGAAGAACTCTCTCCTAAAAAAACTCCAAGTCTTCCAAATATCAGTAATGGCAAAGAACAAGATGCTGATGTTCGCGGACACCCATGGCCTAATTATGGGAAATCTGCTTCCTCATCAAATGAGCAGCCAACAACTTCAAGCCTTGGGACTACTGAAGCCTTACCTTCTGTTCTTGCTGGTCATTTTCAAGAGGTAGAAATCACTACAAATACTGGAAGAGGAAAGGCAGAAGTCCCTCCTCCAATTGCAAGGGTTCAAGCGAGTGATCAAAAGGAAACAGATAACGCTGGGAGCCCAGATGAATCTAAACAGCACAGCTACAAGAATGATTGGATAGGAGAATGTCAAGCAGATGAGGAATTTAAAAATTCAACCTGCACAGTTTGCAATAATCAACGACCAAAGATCGGATGGAAGAGAGACTTTACTTATGCAGAACTCCAAGCTGCTACTGATGGTTTTTCCACAAAGAACTTCCTATCTGAAGGTGGATTTGGTTCAGTCTACAAAGGAGAACTGAATGGGGTGAAGATTGCTGTAAAGCAACATAAAAATGCAAGCTTCCAAGGAGAGAAAGAATTTAAGTCTGAAGTTCATGTACTCAGCAAAGCAAGACATGAAAATTTGGTTATGCTGTTAGGATCATGTTCAGAAGGAAGACAGAGGCTCCTTGTTTACGAATATGTTTGCAACGGTTCTTTGGATCAACATTTATCAACACATAACACCAGGCCTCTCAGTTGGGATAAGAAGATAAAAATCGCTACTGGAGCTGCAAAAGGGTTAAAATATCTGCATGAGAACAACATCATCCATAGGGACGTGAGACCAAACAACGTCCTCGTGTCACATGATTATGAATCCCTGCTAGGAGATTTTGGTCTTGCAAGAACTCAACATGAAGACTCAGATCGATCAACAGACACAACAACAGTTGTCGGAACTTTGGGATATTTGGCACCAGAATATGCAGAAAGTGGGAAAGTGTCAACCAAGACAGATGTTTATGCTTTCGGGGTCATTCTATTACAGCTTATCACAGGAATGAGGCCTACAGACAAGAAGCTTGGAGGGAAAAGTCTTGTGGGATGGGCAAGACCACTATTGAAAGAAAGGAATTACCCAGATTTAATCGACCCAAGGAATGTAGATGCGCATGATGTGCATCAACTCTATTGGATGGTTCGGGTAGCAGAAAAATGTCTCAGCAGGGATCCTTACAAGAGATTAACTATGGATAAGGTACGTCCACATGATTAA

Protein Analysis

563

Amino Acids

62.71

Weight (kDa)

8.56

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 300 - 562 7.8e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 301 - 559 1.6e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1587
Acc36I ACCTGC 1 cut(s) 815
AccB1I GGYRCC 1 cut(s) 1390
AccI GTMKAC 1 cut(s) 936
AccII CGCG 1 cut(s) 507
AciI CCGC 1 cut(s) 507
AclWI GGATC 5 cut(s) 25, 1081, 1143, 1640, 1653
AcsI RAATTY 5 cut(s) 274, 791, 799, 1010, 1054
AcuI CTGAAG 3 cut(s) 606, 936, 1041
AfaI GTAC 3 cut(s) 162, 1032, 1677
AfiI CCNNNNNNNGG 2 cut(s) 527, 839
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 7 cut(s) 74, 320, 570, 620, 689, 804, 1540
AjiI CACGTC 1 cut(s) 1255
AjnI CCWGG 4 cut(s) 33, 103, 380, 1160
AjuI GAANNNNNNNTTGG 2 cut(s) 909, 941
AluBI AGCT 8 cut(s) 14, 365, 750, 878, 993, 1205, 1465, 1498
AluI AGCT 8 cut(s) 14, 365, 750, 878, 993, 1205, 1465, 1498
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 5 cut(s) 180, 379, 846, 1252, 1640
AlwI GGATC 5 cut(s) 25, 1081, 1143, 1640, 1653
AlwNI CAGNNNCTG 2 cut(s) 200, 365
AoxI GGCC 5 cut(s) 169, 331, 518, 1163, 1481
ApeKI GCWGC 6 cut(s) 191, 200, 362, 556, 878, 1205
ApoI RAATTY 5 cut(s) 274, 791, 799, 1010, 1054
AspLEI GCGC 2 cut(s) 375, 1588
AspS9I GGNCC 2 cut(s) 170, 332
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 4 cut(s) 40, 128, 310, 970
BamHI GGATCC 1 cut(s) 1645
BanI GGYRCC 1 cut(s) 1390
BanII GRGCYC 1 cut(s) 728
BarI GAAGNNNNNNTAC 2 cut(s) 1014, 1046
BauI CACGAG 1 cut(s) 1274
BbsI GAAGAC 3 cut(s) 455, 1096, 1341
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 6 cut(s) 178, 187, 374, 568, 865, 1192
BccI CCATC 5 cut(s) 178, 837, 881, 1515, 1606
BciT130I CCWGG 4 cut(s) 35, 105, 382, 1162
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 5 cut(s) 180, 379, 846, 1252, 1640
BfaI CTAG 1 cut(s) 1301
BfmI CTRYAG 2 cut(s) 192, 1485
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 6 cut(s) 192, 201, 363, 557, 879, 1206
BlsI GCNGC 6 cut(s) 193, 202, 364, 558, 880, 1207
BmcAI AGTACT 1 cut(s) 162
Bme1390I CCNGG 5 cut(s) 35, 105, 382, 426, 1162
BmgBI CACGTC 1 cut(s) 1255
BmgT120I GGNCC 2 cut(s) 170, 332
BmiI GGNNCC 4 cut(s) 725, 1100, 1392, 1647
BmrFI CCNGG 5 cut(s) 35, 105, 382, 426, 1162
BmsI GCATC 6 cut(s) 28, 50, 187, 484, 1573, 1606
BpiI GAAGAC 3 cut(s) 455, 1096, 1341
BpmI CTGGAG 1 cut(s) 1221
BpuMI CCSGG 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 1345
BsaBI GATNNNNATC 2 cut(s) 1190, 1596
BsaI GGTCTC 1 cut(s) 1252
BsaJI CCNNGG 5 cut(s) 104, 515, 574, 997, 1571
BsaXI ACNNNNNCTCC 2 cut(s) 1083, 1113
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 839
Bse1I ACTGG 2 cut(s) 649, 1204
Bse8I GATNNNNATC 2 cut(s) 1190, 1596
BseBI CCWGG 4 cut(s) 35, 105, 382, 1162
BseCI ATCGAT 1 cut(s) 1345
BseDI CCNNGG 5 cut(s) 104, 515, 574, 997, 1571
BseGI GGATG 6 cut(s) 43, 115, 848, 1242, 1526, 1617
BseJI GATNNNNATC 2 cut(s) 1190, 1596
BseLI CCNNNNNNNGG 2 cut(s) 527, 839
BseMII CTCAG 6 cut(s) 29, 317, 1048, 1183, 1353, 1651
BseNI ACTGG 2 cut(s) 649, 1204
BseRI GAGGAG 1 cut(s) 660
BseXI GCAGC 6 cut(s) 178, 187, 374, 568, 865, 1192
BseYI CCCAGC 1 cut(s) 719
BsgI GTGCAG 1 cut(s) 793
Bsh1236I CGCG 1 cut(s) 507
BshFI GGCC 5 cut(s) 171, 333, 520, 1165, 1483
BshNI GGYRCC 1 cut(s) 1390
BshVI ATCGAT 1 cut(s) 1345
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 3 cut(s) 592, 650, 1265
BslI CCNNNNNNNGG 2 cut(s) 527, 839
BsmAI GTCTC 5 cut(s) 180, 379, 846, 1252, 1640
BsmBI CGTCTC 2 cut(s) 180, 379
BsmFI GGGAC 3 cut(s) 592, 650, 1265
BsnI GGCC 5 cut(s) 171, 333, 520, 1165, 1483
Bso31I GGTCTC 1 cut(s) 1252
Bsp1286I GDGCHC 2 cut(s) 68, 728
Bsp143I GATC 8 cut(s) 30, 697, 837, 1073, 1135, 1342, 1346, 1645
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 1 cut(s) 507
BspANI GGCC 5 cut(s) 171, 333, 520, 1165, 1483
BspCNI CTCAG 6 cut(s) 28, 318, 1047, 1182, 1352, 1650
BspDI ATCGAT 1 cut(s) 1345
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 725, 1100, 1392, 1647
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 5 cut(s) 25, 1081, 1143, 1640, 1653
BspT107I GGYRCC 1 cut(s) 1390
BspTNI GGTCTC 1 cut(s) 1252
BsrI ACTGG 2 cut(s) 649, 1204
BssECI CCNNGG 5 cut(s) 104, 515, 574, 997, 1571
BssMI GATC 8 cut(s) 30, 697, 837, 1073, 1135, 1342, 1346, 1645
BssSI CACGAG 1 cut(s) 1274
BssT1I CCWWGG 4 cut(s) 515, 574, 997, 1571
Bst2BI CACGAG 1 cut(s) 1274
Bst2UI CCWGG 4 cut(s) 35, 105, 382, 1162
Bst4CI ACNGT 3 cut(s) 814, 1127, 1366
Bst6I CTCTTC 2 cut(s) 643, 842
BstAPI GCANNNNNTGC 3 cut(s) 200, 816, 1594
BstC8I GCNNGC 4 cut(s) 169, 356, 360, 991
BstDEI CTNAG 6 cut(s) 15, 326, 1034, 1169, 1339, 1637
BstDSI CCRYGG 1 cut(s) 515
BstF5I GGATG 6 cut(s) 43, 115, 848, 1242, 1526, 1617
BstFNI CGCG 1 cut(s) 507
BstHHI GCGC 2 cut(s) 375, 1588
BstKTI GATC 8 cut(s) 33, 700, 840, 1076, 1138, 1345, 1349, 1648
BstMAI GTCTC 5 cut(s) 180, 379, 846, 1252, 1640
BstMBI GATC 8 cut(s) 30, 697, 837, 1073, 1135, 1342, 1346, 1645
BstMWI GCNNNNNNNGC 5 cut(s) 197, 200, 816, 1202, 1594
BstNI CCWGG 4 cut(s) 35, 105, 382, 1162
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 5 cut(s) 33, 103, 380, 424, 1160
BstSFI CTRYAG 2 cut(s) 192, 1485
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 6 cut(s) 178, 187, 374, 568, 865, 1192
BstV2I GAAGAC 3 cut(s) 455, 1096, 1341
BstX2I RGATCY 1 cut(s) 1645
BstYI RGATCY 1 cut(s) 1645
Bsu15I ATCGAT 1 cut(s) 1345
BsuRI GGCC 5 cut(s) 171, 333, 520, 1165, 1483
BsuTUI ATCGAT 1 cut(s) 1345
BtgI CCRYGG 1 cut(s) 515
BtrI CACGTC 1 cut(s) 1255
BtsCI GGATG 6 cut(s) 43, 115, 848, 1242, 1526, 1617
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 4 cut(s) 169, 356, 360, 991
CaiI CAGNNNCTG 2 cut(s) 200, 365
CfoI GCGC 2 cut(s) 375, 1588
Cfr13I GGNCC 2 cut(s) 170, 332
ClaI ATCGAT 1 cut(s) 1345
Csp6I GTAC 3 cut(s) 161, 1031, 1676
CviQI GTAC 3 cut(s) 161, 1031, 1676
DdeI CTNAG 6 cut(s) 15, 326, 1034, 1169, 1339, 1637
DpnI GATC 8 cut(s) 32, 699, 839, 1075, 1137, 1344, 1348, 1647
DpnII GATC 8 cut(s) 30, 697, 837, 1073, 1135, 1342, 1346, 1645
DraI TTTAAA 1 cut(s) 796
Eam1104I CTCTTC 2 cut(s) 643, 842
EarI CTCTTC 2 cut(s) 643, 842
Eco130I CCWWGG 4 cut(s) 515, 574, 997, 1571
Eco147I AGGCCT 2 cut(s) 1165, 1483
Eco24I GRGCYC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 1252
Eco57I CTGAAG 3 cut(s) 606, 936, 1041
EcoRII CCWGG 4 cut(s) 33, 103, 380, 1160
EcoT14I CCWWGG 4 cut(s) 515, 574, 997, 1571
EcoT22I ATGCAT 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 728
ErhI CCWWGG 4 cut(s) 515, 574, 997, 1571
Esp3I CGTCTC 2 cut(s) 180, 379
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 839, 871
FaqI GGGAC 3 cut(s) 592, 650, 1265
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 1 cut(s) 936
Fnu4HI GCNGC 6 cut(s) 192, 201, 363, 557, 879, 1206
FokI GGATG 6 cut(s) 50, 122, 855, 1229, 1533, 1624
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 6 cut(s) 192, 201, 363, 557, 879, 1206
FspAI RTGCGCAY 1 cut(s) 1587
FspBI CTAG 1 cut(s) 1301
FspI TGCGCA 1 cut(s) 1587
GlaI GCGC 2 cut(s) 374, 1587
GluI GCNGC 6 cut(s) 192, 201, 363, 557, 879, 1206
GsaI CCCAGC 1 cut(s) 723
GsuI CTGGAG 1 cut(s) 1221
HaeIII GGCC 5 cut(s) 171, 333, 520, 1165, 1483
HapII CCGG 1 cut(s) 426
HhaI GCGC 2 cut(s) 375, 1588
Hin6I GCGC 2 cut(s) 373, 1586
HinP1I GCGC 2 cut(s) 373, 1586
HincII GTYRAC 1 cut(s) 1422
HindII GTYRAC 1 cut(s) 1422
HindIII AAGCTT 2 cut(s) 991, 1496
HinfI GANTC 3 cut(s) 734, 1292, 1337
HpaII CCGG 1 cut(s) 426
HphI GGTGA 4 cut(s) 40, 128, 310, 970
Hpy166II GTNNAC 4 cut(s) 937, 1108, 1422, 1682
Hpy188I TCNGA 7 cut(s) 18, 842, 916, 1021, 1084, 1342, 1373
Hpy188III TCNNGA 2 cut(s) 233, 620
Hpy8I GTNNAC 4 cut(s) 937, 1108, 1422, 1682
HpyAV CCTTC 3 cut(s) 606, 911, 1079
HpyCH4III ACNGT 3 cut(s) 814, 1127, 1366
HpyCH4IV ACGT 5 cut(s) 221, 388, 1254, 1269, 1678
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 200, 816, 1202, 1594
HpyF3I CTNAG 6 cut(s) 15, 326, 1034, 1169, 1339, 1637
HpySE526I ACGT 5 cut(s) 221, 388, 1254, 1269, 1678
HspAI GCGC 2 cut(s) 373, 1586
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 8 cut(s) 30, 697, 837, 1073, 1135, 1342, 1346, 1645
LmnI GCTCC 4 cut(s) 215, 723, 1104, 1202
Lsp1109I GCAGC 6 cut(s) 178, 187, 374, 568, 865, 1192
LweI GCATC 6 cut(s) 28, 50, 187, 484, 1573, 1606
MaeI CTAG 1 cut(s) 1301
MaeII ACGT 5 cut(s) 221, 388, 1254, 1269, 1678
MaeIII GTNAC 2 cut(s) 305, 1278
MalI GATC 8 cut(s) 32, 699, 839, 1075, 1137, 1344, 1348, 1647
MboI GATC 8 cut(s) 30, 697, 837, 1073, 1135, 1342, 1346, 1645
MfeI CAATTG 2 cut(s) 342, 675
MflI RGATCY 1 cut(s) 1645
MhlI GDGCHC 2 cut(s) 68, 728
MlyI GAGTC 1 cut(s) 1331
MmeI TCCRAC 1 cut(s) 1351
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 7 cut(s) 144, 795, 1014, 1217, 1562, 1661, 1690
MslI CAYNNNNRTG 3 cut(s) 984, 1287, 1475
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 5 cut(s) 35, 105, 382, 426, 1162
MunI CAATTG 2 cut(s) 342, 675
MvaI CCWGG 4 cut(s) 35, 105, 382, 1162
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 5 cut(s) 197, 200, 816, 1202, 1594
NciI CCSGG 1 cut(s) 426
NcoI CCATGG 1 cut(s) 515
NdeII GATC 8 cut(s) 30, 697, 837, 1073, 1135, 1342, 1346, 1645
NlaIV GGNNCC 4 cut(s) 725, 1100, 1392, 1647
NmuCI GTSAC 1 cut(s) 1278
NsbI TGCGCA 1 cut(s) 1587
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 1 cut(s) 285
PceI AGGCCT 2 cut(s) 1165, 1483
PciI ACATGT 1 cut(s) 281
PfeI GAWTC 2 cut(s) 734, 1292
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 6 cut(s) 193, 202, 364, 558, 880, 1207
PleI GAGTC 1 cut(s) 1331
PpsI GAGTC 1 cut(s) 1331
PscI ACATGT 1 cut(s) 281
Psp6I CCWGG 4 cut(s) 33, 103, 380, 1160
PspFI CCCAGC 1 cut(s) 719
PspGI CCWGG 4 cut(s) 33, 103, 380, 1160
PspN4I GGNNCC 4 cut(s) 725, 1100, 1392, 1647
PspPI GGNCC 2 cut(s) 170, 332
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 2 cut(s) 200, 365
PsuI RGATCY 1 cut(s) 1645
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 3 cut(s) 162, 1032, 1677
RsaNI GTAC 3 cut(s) 161, 1031, 1676
RseI CAYNNNNRTG 3 cut(s) 984, 1287, 1475
SaqAI TTAA 7 cut(s) 144, 795, 1014, 1217, 1562, 1661, 1690
SatI GCNGC 6 cut(s) 192, 201, 363, 557, 879, 1206
Sau3AI GATC 8 cut(s) 30, 697, 837, 1073, 1135, 1342, 1346, 1645
Sau96I GGNCC 2 cut(s) 170, 332
ScaI AGTACT 1 cut(s) 162
SchI GAGTC 1 cut(s) 1331
ScrFI CCNGG 5 cut(s) 35, 105, 382, 426, 1162
SduI GDGCHC 2 cut(s) 68, 728
SfaNI GCATC 6 cut(s) 28, 50, 187, 484, 1573, 1606
SfcI CTRYAG 2 cut(s) 192, 1485
SmiMI CAYNNNNRTG 3 cut(s) 984, 1287, 1475
SseBI AGGCCT 2 cut(s) 1165, 1483
SsiI CCGC 1 cut(s) 507
SspMI CTAG 1 cut(s) 1301
StuI AGGCCT 2 cut(s) 1165, 1483
StyD4I CCNGG 5 cut(s) 33, 103, 380, 424, 1160
StyI CCWWGG 4 cut(s) 515, 574, 997, 1571
TaaI ACNGT 3 cut(s) 814, 1127, 1366
TaiI ACGT 5 cut(s) 224, 391, 1257, 1272, 1681
TaqI TCGA 4 cut(s) 62, 293, 1345, 1566
TatI WGTACW 2 cut(s) 160, 1030
TfiI GAWTC 2 cut(s) 734, 1292
Tru1I TTAA 7 cut(s) 144, 795, 1014, 1217, 1562, 1661, 1690
Tru9I TTAA 7 cut(s) 144, 795, 1014, 1217, 1562, 1661, 1690
TseFI GTSAC 1 cut(s) 1278
TseI GCWGC 6 cut(s) 191, 200, 362, 556, 878, 1205
Tsp45I GTSAC 1 cut(s) 1278
XapI RAATTY 5 cut(s) 274, 791, 799, 1010, 1054
XceI RCATGY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XmiI GTMKAC 1 cut(s) 936
XspI CTAG 1 cut(s) 1301
ZrmI AGTACT 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.