MD03G1003400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015033
Physical Location & Seq
Forward (+)
237219 .. 239918
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1003400.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGTGTTCAACAGCGTAATGGTGGAGTCGGTGGCGCACCTGTCGGCGGAGATGTGGCAGTACTTGGCATGCTTACCGGAGCGCATGAGCAGCCACCAGCTGTTAGATCTCATCTTCTGCTTCCCTCTGCAGCAGTTGGGTCGCCTGGCTTTCTGCCTCTGGACCTTCCTCTGCGTCCCTCCGCCCGACTCCTACTACTACTACTCTTCCTCCGACTCCGATGACTCGTCCACCACCGTCGATTACGATGACTATTACTACGATCCCCACTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.73

Weight (kDa)

4.05

Isoelectric Point (pI)

67.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56520
fragaria_vesca FvH4_3g45760
malus_domestica MD03G1003400.v1.1 MD11G1003200.v1.1
prunus_persica Prupe.6G003100_v2.0.a1 Prupe.6G003100_v2.0.a1 Prupe.6G003100_v2.0.a1
pyrus_communis pycom03g00340 pycom11g00290
rosa_chinensis RchiOBHm_Chr5g0083831
rosa_multiflora Rmu_sc0001287.1_g000038 Rmu_sc0024007.1_g000004
rosa_roxburghii Rroxscaffold_1G00000760
rosa_rugosa Rorug05G0486300
rosa_samantha Rh5AG539500
rosa_wichuraiana Rw5G050150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 182
AclWI GGATC 1 cut(s) 257
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 90, 130
AspLEI GCGC 2 cut(s) 37, 84
AspS9I GGNCC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 102, 142
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 128
BglII AGATCT 1 cut(s) 106
BisI GCNGC 2 cut(s) 91, 131
BlsI GCNGC 2 cut(s) 92, 132
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 102, 142
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 106, 262
BspACI CCGC 2 cut(s) 47, 182
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 257
BssMI GATC 2 cut(s) 106, 262
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 70
BstHHI GCGC 2 cut(s) 37, 84
BstKTI GATC 2 cut(s) 109, 265
BstMBI GATC 2 cut(s) 106, 262
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 102, 142
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 2 cut(s) 37, 84
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 61
CspCI CAANNNNNGTGG 1 cut(s) 257
CviAII CATG 2 cut(s) 69, 85
CviJI RGCY 3 cut(s) 93, 100, 149
CviKI_1 RGCY 3 cut(s) 93, 100, 149
CviQI GTAC 1 cut(s) 61
DpnI GATC 2 cut(s) 108, 264
DpnII GATC 2 cut(s) 106, 262
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
EciI GGCGGA 2 cut(s) 62, 171
Eco47I GGWCC 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 72, 88
FaiI YATR 2 cut(s) 70, 86
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 68, 84
Fnu4HI GCNGC 2 cut(s) 91, 131
Fsp4HI GCNGC 2 cut(s) 91, 131
GlaI GCGC 2 cut(s) 36, 83
GluI GCNGC 2 cut(s) 91, 131
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 37, 84
Hin1II CATG 2 cut(s) 72, 88
Hin6I GCGC 2 cut(s) 35, 82
HinP1I GCGC 2 cut(s) 35, 82
HinfI GANTC 4 cut(s) 26, 188, 215, 224
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 3 cut(s) 214, 220, 274
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 72, 88
HspAI GCGC 2 cut(s) 35, 82
Kzo9I GATC 2 cut(s) 106, 262
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 53, 90, 110, 131, 145, 158
Lsp1109I GCAGC 2 cut(s) 102, 142
MalI GATC 2 cut(s) 108, 264
MboI GATC 2 cut(s) 106, 262
MboII GAAGA 2 cut(s) 106, 198
MflI RGATCY 1 cut(s) 106
MlyI GAGTC 4 cut(s) 35, 182, 209, 218
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 5 cut(s) 135, 167, 179, 189, 220
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 2 cut(s) 106, 262
NlaIII CATG 2 cut(s) 72, 88
NspI RCATGY 1 cut(s) 72
PaeI GCATGC 1 cut(s) 72
PkrI GCNGC 2 cut(s) 92, 132
PleI GAGTC 4 cut(s) 34, 182, 209, 218
PpsI GAGTC 4 cut(s) 34, 182, 209, 218
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 1 cut(s) 162
PstI CTGCAG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SatI GCNGC 2 cut(s) 91, 131
Sau3AI GATC 2 cut(s) 106, 262
Sau96I GGNCC 1 cut(s) 162
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 4 cut(s) 35, 182, 209, 218
ScrFI CCNGG 1 cut(s) 146
SetI ASST 3 cut(s) 42, 102, 167
SfcI CTRYAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 162
SphI GCATGC 1 cut(s) 72
SsiI CCGC 2 cut(s) 47, 182
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 240
TatI WGTACW 1 cut(s) 60
TseI GCWGC 2 cut(s) 90, 130
VpaK11BI GGWCC 1 cut(s) 162
XceI RCATGY 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.