MD11G1003200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015033
Physical Location & Seq
Forward (+)
259811 .. 262555
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1003200.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGTGTTCAACAGCCTGATGGTGGAGTCGGTGGCGCACCTGTCGGCCGAGATGTGGCAGTACTTGGCATGCTTACCGGAGCGCTTGAGCAGCCACCAGCTGTTGGATCTCATCTTCTGCCTCCCTCTGCAGCAGTTGGGTCGCCTGGCTTTCTGCCTCTGGACCTTCCTCTGCGTCCCTCCGCCCGACTCCTACTACTCCTACTCTTACTCCGACTCCGATGACTCATCCTCCACCGTCGATTACGATGACTATTACTACGATCCCCACTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.68

Weight (kDa)

4.05

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56520
fragaria_vesca FvH4_3g45760
malus_domestica MD03G1003400.v1.1 MD11G1003200.v1.1
prunus_persica Prupe.6G003100_v2.0.a1 Prupe.6G003100_v2.0.a1 Prupe.6G003100_v2.0.a1
pyrus_communis pycom03g00340 pycom11g00290
rosa_chinensis RchiOBHm_Chr5g0083831
rosa_multiflora Rmu_sc0001287.1_g000038 Rmu_sc0024007.1_g000004
rosa_roxburghii Rroxscaffold_1G00000760
rosa_rugosa Rorug05G0486300
rosa_samantha Rh5AG539500
rosa_wichuraiana Rw5G050150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 1 cut(s) 182
AclWI GGATC 2 cut(s) 114, 257
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 1 cut(s) 62
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 3 cut(s) 22, 54, 103
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 2 cut(s) 114, 257
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 90, 130
AspLEI GCGC 2 cut(s) 37, 84
AspS9I GGNCC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 102, 142
BccI CCATC 1 cut(s) 13
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 2 cut(s) 91, 131
BlsI GCNGC 2 cut(s) 92, 132
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 6 cut(s) 194, 200, 215, 224, 230, 245
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 54, 103
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 3 cut(s) 22, 54, 103
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 102, 142
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 47
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 22, 54, 103
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 106, 262
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 114, 257
BssMI GATC 2 cut(s) 106, 262
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 70
BstF5I GGATG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 37, 84
BstKTI GATC 2 cut(s) 109, 265
BstMBI GATC 2 cut(s) 106, 262
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 102, 142
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 2 cut(s) 37, 84
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 61
CspCI CAANNNNNGTGG 1 cut(s) 257
CviAII CATG 1 cut(s) 69
CviJI RGCY 5 cut(s) 15, 47, 93, 100, 149
CviKI_1 RGCY 5 cut(s) 15, 47, 93, 100, 149
CviQI GTAC 1 cut(s) 61
DpnI GATC 2 cut(s) 108, 264
DpnII GATC 2 cut(s) 106, 262
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
EciI GGCGGA 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 83
Eco52I CGGCCG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 72
FaiI YATR 1 cut(s) 70
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 91, 131
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 2 cut(s) 91, 131
GlaI GCGC 2 cut(s) 36, 83
GluI GCNGC 2 cut(s) 91, 131
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 37, 84
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 2 cut(s) 35, 82
HinP1I GCGC 2 cut(s) 35, 82
HinfI GANTC 4 cut(s) 26, 188, 215, 224
HpaII CCGG 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 214, 220, 274
Hpy188III TCNNGA 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 2 cut(s) 35, 82
Kzo9I GATC 2 cut(s) 106, 262
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 7 cut(s) 29, 53, 90, 110, 131, 145, 158
Lsp1109I GCAGC 2 cut(s) 102, 142
MalI GATC 2 cut(s) 108, 264
MboI GATC 2 cut(s) 106, 262
MboII GAAGA 1 cut(s) 106
MflI RGATCY 1 cut(s) 106
MlyI GAGTC 4 cut(s) 35, 182, 209, 218
MmeI TCCRAC 2 cut(s) 84, 237
MnlI CCTC 6 cut(s) 131, 135, 167, 179, 189, 241
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 2 cut(s) 106, 262
NlaIII CATG 1 cut(s) 72
NmeAIII GCCGAG 1 cut(s) 73
NspI RCATGY 1 cut(s) 72
PaeI GCATGC 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 2 cut(s) 92, 132
PleI GAGTC 4 cut(s) 34, 182, 209, 218
PpsI GAGTC 4 cut(s) 34, 182, 209, 218
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 1 cut(s) 162
PstI CTGCAG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SatI GCNGC 2 cut(s) 91, 131
Sau3AI GATC 2 cut(s) 106, 262
Sau96I GGNCC 1 cut(s) 162
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 4 cut(s) 35, 182, 209, 218
ScrFI CCNGG 1 cut(s) 146
SetI ASST 3 cut(s) 42, 102, 167
SfcI CTRYAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SphI GCATGC 1 cut(s) 72
SsiI CCGC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 240
TatI WGTACW 1 cut(s) 60
TseI GCWGC 2 cut(s) 90, 130
Van91I CCANNNNNTGG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 162
XceI RCATGY 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.