Prupe.6G003100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015033
Physical Location & Seq
Forward (+)
335015 .. 338023
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G003100.1

Sequence Viewer

Length: 279 bp
ATGGTGTTCAACAGCCTGATGGTGGTGTCAGTGGCGCACACGTCAACGGAGATGTGGCAATATTTGGCATGTTTACCTGAGCGTCTGAGCAGCCATCAGCTGTTAGATCTTGTCTTCTGCTTCCCTCTGCAGCAGTTGGGTCGTCTCGCTCTCTGCCTCTGGACCTTCCTCTGCGTCCCTCCTCCGGACTCTTACTACTCCTACTCCTACTCTGACTCTGATGCCTCCTCCTCCACCGTTGTTTACAATGATTATTACTACGACTCCCATTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.58

Weight (kDa)

4.35

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56520
fragaria_vesca FvH4_3g45760
malus_domestica MD03G1003400.v1.1 MD11G1003200.v1.1
prunus_persica Prupe.6G003100_v2.0.a1 Prupe.6G003100_v2.0.a1 Prupe.6G003100_v2.0.a1
pyrus_communis pycom03g00340 pycom11g00290
rosa_chinensis RchiOBHm_Chr5g0083831
rosa_multiflora Rmu_sc0001287.1_g000038 Rmu_sc0024007.1_g000004
rosa_roxburghii Rroxscaffold_1G00000760
rosa_rugosa Rorug05G0486300
rosa_samantha Rh5AG539500
rosa_wichuraiana Rw5G050150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 22, 184
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 1 cut(s) 10
AjiI CACGTC 1 cut(s) 42
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 90, 130
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 102, 142
BccI CCATC 2 cut(s) 13, 102
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 128
BglII AGATCT 1 cut(s) 106
BisI GCNGC 2 cut(s) 91, 131
BlsI GCNGC 2 cut(s) 92, 132
Bme18I GGWCC 1 cut(s) 162
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 248, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 184
BseAI TCCGGA 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 22, 184
BseMII CTCAG 2 cut(s) 69, 77
BseRI GAGGAG 3 cut(s) 171, 217, 220
BseXI GCAGC 2 cut(s) 102, 142
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 22, 184
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 70, 78
BspEI TCCGGA 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 132
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 78, 86
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 102, 142
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BtrI CACGTC 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 36
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 2 cut(s) 71, 163
CviAII CATG 1 cut(s) 69
CviJI RGCY 3 cut(s) 15, 93, 100
CviKI_1 RGCY 3 cut(s) 15, 93, 100
DdeI CTNAG 2 cut(s) 78, 86
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 1 cut(s) 72
FaiI YATR 1 cut(s) 70
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 91, 131
Fsp4HI GCNGC 2 cut(s) 91, 131
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 91, 131
HapII CCGG 1 cut(s) 185
HgaI GACGC 2 cut(s) 71, 163
HhaI GCGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 3 cut(s) 188, 215, 263
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 45, 74, 244
Hpy188I TCNGA 4 cut(s) 87, 214, 220, 274
Hpy188III TCNNGA 2 cut(s) 160, 185
Hpy8I GTNNAC 3 cut(s) 45, 74, 244
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 78, 86
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 1 cut(s) 35
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 29, 90, 145, 198
Lsp1109I GCAGC 2 cut(s) 102, 142
LweI GCATC 1 cut(s) 211
MaeII ACGT 1 cut(s) 41
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 106
MflI RGATCY 1 cut(s) 106
MlyI GAGTC 3 cut(s) 182, 209, 257
MnlI CCTC 8 cut(s) 135, 167, 179, 189, 192, 235, 238, 241
MroI TCCGGA 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 185
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 72
NspI RCATGY 1 cut(s) 72
PkrI GCNGC 2 cut(s) 92, 132
PleI GAGTC 3 cut(s) 182, 209, 257
PpsI GAGTC 3 cut(s) 182, 209, 257
PspPI GGNCC 1 cut(s) 162
PstI CTGCAG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 100
SatI GCNGC 2 cut(s) 91, 131
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 3 cut(s) 182, 209, 257
SetI ASST 4 cut(s) 44, 79, 102, 167
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 128
SgeI CNNG 8 cut(s) 28, 52, 81, 89, 122, 158, 172, 197
SinI GGWCC 1 cut(s) 162
SspI AATATT 1 cut(s) 62
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 44
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 90, 130
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 162
XceI RCATGY 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.