RchiOBHm_Chr5g0083831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015033
Physical Location & Seq
Reverse (-)
89530970 .. 89534468
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35794

Sequence Viewer

Length: 291 bp
ATGGTGTTCAACAGCCTGATAGTGGTGTCGGTGGCACACCTGTCAGCGGAGGCATGGCAACACGTGGCGTGCCTGCCGGAGCGTCTGAGCAGCCGGCAGCTGTTGGATCTTGTGTGCGTCATCCCTCTCCAGGAATTGGGTCGCCTCACTCTTTGCCTCTGGACCTTCCTCTGCGTCCCTCCTCCCGACTCCTACTTCTCCCGTTACTCCGACTCCGACTCCGACTCTGACTCTGACTCCTCCACCACCGTCGATTACGATGACTATTACTACCACCCGCATTCCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.9

Weight (kDa)

4.33

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56520
fragaria_vesca FvH4_3g45760
malus_domestica MD03G1003400.v1.1 MD11G1003200.v1.1
prunus_persica Prupe.6G003100_v2.0.a1 Prupe.6G003100_v2.0.a1 Prupe.6G003100_v2.0.a1
pyrus_communis pycom03g00340 pycom11g00290
rosa_chinensis RchiOBHm_Chr5g0083831
rosa_multiflora Rmu_sc0001287.1_g000038 Rmu_sc0024007.1_g000004
rosa_roxburghii Rroxscaffold_1G00000760
rosa_rugosa Rorug05G0486300
rosa_samantha Rh5AG539500
rosa_wichuraiana Rw5G050150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AciI CCGC 2 cut(s) 47, 278
AclWI GGATC 1 cut(s) 114
AcvI CACGTG 1 cut(s) 64
AfiI CCNNNNNNNGG 4 cut(s) 22, 46, 130, 136
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 90, 97
AspS9I GGNCC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 162
BbrPI CACGTG 1 cut(s) 64
BbvI GCAGC 2 cut(s) 102, 109
BciT130I CCWGG 1 cut(s) 131
BisI GCNGC 2 cut(s) 91, 98
BlsI GCNGC 2 cut(s) 92, 99
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 64
BsaXI ACNNNNNCTCC 6 cut(s) 197, 203, 221, 227, 233, 251
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 46, 130, 136
Bse118I RCCGGY 1 cut(s) 93
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 4 cut(s) 22, 46, 130, 136
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 171, 229
BseXI GCAGC 2 cut(s) 102, 109
BsiSI CCGG 2 cut(s) 77, 94
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 4 cut(s) 22, 46, 130, 136
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 2 cut(s) 47, 278
BspCNI CTCAG 1 cut(s) 78
BspPI GGATC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssMI GATC 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 250
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 70, 74, 95
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 102, 109
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 70, 74, 95
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 3 cut(s) 71, 106, 163
CviAII CATG 1 cut(s) 54
CviJI RGCY 3 cut(s) 15, 93, 100
CviKI_1 RGCY 3 cut(s) 15, 93, 100
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 162
Eco72I CACGTG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 57
FaiI YATR 1 cut(s) 55
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 53
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 91, 98
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 91, 98
GluI GCNGC 2 cut(s) 91, 98
GsuI CTGGAG 1 cut(s) 113
HapII CCGG 2 cut(s) 77, 94
HgaI GACGC 3 cut(s) 71, 106, 163
Hin1II CATG 1 cut(s) 57
HinfI GANTC 6 cut(s) 188, 212, 218, 224, 230, 236
HpaII CCGG 2 cut(s) 77, 94
Hpy188I TCNGA 7 cut(s) 87, 211, 217, 223, 229, 235, 286
Hpy188III TCNNGA 2 cut(s) 160, 185
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 57
KroI GCCGGC 1 cut(s) 93
KroNI GCCGGC 1 cut(s) 95
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 8 cut(s) 29, 53, 86, 90, 107, 116, 143, 145
Lsp1109I GCAGC 2 cut(s) 102, 109
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MflI RGATCY 1 cut(s) 106
MluCI AATT 1 cut(s) 134
MlyI GAGTC 6 cut(s) 182, 206, 212, 218, 224, 230
MmeI TCCRAC 4 cut(s) 84, 234, 240, 246
MnlI CCTC 8 cut(s) 43, 135, 155, 167, 179, 189, 192, 250
MroNI GCCGGC 1 cut(s) 93
MspA1I CMGCKG 2 cut(s) 47, 100
MspI CCGG 2 cut(s) 77, 94
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 131
NaeI GCCGGC 1 cut(s) 95
NdeII GATC 1 cut(s) 106
NgoMIV GCCGGC 1 cut(s) 93
NlaIII CATG 1 cut(s) 57
PctI GAATGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 136
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 92, 99
PleI GAGTC 6 cut(s) 182, 206, 212, 218, 224, 230
PmaCI CACGTG 1 cut(s) 64
PmlI CACGTG 1 cut(s) 64
PpsI GAGTC 6 cut(s) 182, 206, 212, 218, 224, 230
Ppu21I YACGTR 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 129
PspCI CACGTG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 1 cut(s) 162
PsuI RGATCY 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 100
SatI GCNGC 2 cut(s) 91, 98
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 6 cut(s) 182, 206, 212, 218, 224, 230
ScrFI CCNGG 1 cut(s) 131
SetI ASST 4 cut(s) 42, 66, 102, 167
SinI GGWCC 1 cut(s) 162
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 47, 278
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 134
TseI GCWGC 2 cut(s) 90, 97
Van91I CCANNNNNTGG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.