MD03G1035100.v1.1

Fasciclin-like arabinogalactan protein 20

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0020360
Physical Location & Seq
Reverse (-)
2812257 .. 2813030
774 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1035100.v1.1.491

Sequence Viewer

Length: 774 bp
ATGGATCCCAAGTTTGCAGTCCGTTTTATTCTTGTTCTTCTTCTCATCTCACCTCTCTTTGTTACCGGCAACATGCAAGCTGAGGCTGTCCAACCGTACGAAGAAACAAAGAAACACGAACCATCAAGGATGATCAACTTCGGTTTGGTGTCAGCCGTGCTCTCGGACAAAGGGTATCATGCCATGTCACTTACCCTAGACATGGTTCTCGATGCTATAAACCCTAACGCCACTCTTACCCTCTTTTGCCCACAAGACAAAGCTTTCTTTAAATCCAAGTACCCACAGCCTCCACTGACGCTCCTCAAGTACCATGCTTTGCCATTCAAGATGGACAAAGATTCCATGGATGCCTCTCTTCGTCACGGTTCCAAGGTTGATACTCTTCTGCCGGGTCATCCTCTCGTTGTTACTTCCCTACGGGCCGGCACACATGGATATGCTTCTCTTAACCTAGTCAAAGTTACTGAGTGGGATCTCTATAACAATGGACGGCTGATTGTTCACGGGGTTGAGGACTTCTTTGATCCGGCTTTCCAAACCCTAAGGTATCCACAGTACGACGTCATTGCGAAAGATGTTGTCAGTTCTGGTGGAGTTTCTTGGCTCAAGGAGGCGACAGACAATTGGTTTCTTGTGCTAGGTGTGGCTGCTGCTTCCACTTTTGTGCTCGTTCTCGTATTTTTCTTTTGTGCTAAGCCTTCGAAGACCGATGATTTTCAGTATTCTCCTTTGTATTATGGGGTTCTTGGTCATGTATCATTAACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

258

Amino Acids

28.66

Weight (kDa)

6.23

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020360)

Species Orthologous Gene IDs
malus_domestica MD03G1035100.v1.1 MD03G1107500.v1.1 MD15G1046300.v1.1
prunus_persica Prupe.1G100500_v2.0.a1 Prupe.1G100600_v2.0.a1
pyrus_communis pycom08g04010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 567
AclWI GGATC 3 cut(s) 12, 483, 521
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 4 cut(s) 98, 281, 311, 560
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 665
AluBI AGCT 2 cut(s) 80, 263
AluI AGCT 2 cut(s) 80, 263
Alw21I GWGCWC 2 cut(s) 162, 672
AlwI GGATC 3 cut(s) 12, 483, 521
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 650, 653
AspS9I GGNCC 1 cut(s) 423
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 42
AsuII TTCGAA 1 cut(s) 704
AxyI CCTNAGG 1 cut(s) 545
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 2 cut(s) 162, 672
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 637, 640
BccI CCATC 2 cut(s) 130, 325
BceAI ACGGC 2 cut(s) 140, 509
BcgI CGANNNNNNTGC 2 cut(s) 551, 585
BciVI GTATCC 1 cut(s) 561
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 1 cut(s) 393
BfaI CTAG 3 cut(s) 197, 455, 641
BfuI GTATCC 1 cut(s) 561
BisI GCNGC 2 cut(s) 651, 654
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 2 cut(s) 652, 655
Bme1390I CCNGG 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 6, 370
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 2 cut(s) 202, 340
BpiI GAAGAC 1 cut(s) 713
Bpu10I CCTNAGC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 696
Bpu14I TTCGAA 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 290, 593
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 345, 372
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 2 cut(s) 65, 425
Bse21I CCTNAGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 567
BseDI CCNNGG 2 cut(s) 345, 372
BseGI GGATG 3 cut(s) 135, 355, 397
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 2 cut(s) 72, 459
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 637, 640
BshFI GGCC 1 cut(s) 425
BsiHKAI GWGCWC 2 cut(s) 162, 672
BsiSI CCGG 4 cut(s) 66, 392, 426, 530
BsiWI CGTACG 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 202
BsnI GGCC 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 162, 672
Bsp143I GATC 4 cut(s) 4, 132, 475, 526
Bsp1720I GCTNAGC 1 cut(s) 696
Bsp19I CCATGG 1 cut(s) 345
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 2 cut(s) 73, 460
BspLI GGNNCC 2 cut(s) 6, 370
BspPI GGATC 3 cut(s) 12, 483, 521
BspT104I TTCGAA 1 cut(s) 704
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 2 cut(s) 65, 425
BssAI RCCGGY 2 cut(s) 65, 425
BssECI CCNNGG 2 cut(s) 345, 372
BssMI GATC 4 cut(s) 4, 132, 475, 526
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 2 cut(s) 345, 372
Bst4CI ACNGT 3 cut(s) 96, 368, 558
Bst6I CTCTTC 2 cut(s) 363, 390
BstACI GRCGYC 1 cut(s) 564
BstBI TTCGAA 1 cut(s) 704
BstC8I GCNNGC 2 cut(s) 78, 427
BstDEI CTNAG 4 cut(s) 81, 468, 545, 696
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 3 cut(s) 135, 355, 397
BstKTI GATC 4 cut(s) 7, 135, 478, 529
BstMBI GATC 4 cut(s) 4, 132, 475, 526
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 391
BstV1I GCAGC 2 cut(s) 637, 640
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 2 cut(s) 4, 475
BstYI RGATCY 2 cut(s) 4, 475
Bsu36I CCTNAGG 1 cut(s) 545
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 1 cut(s) 425
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 3 cut(s) 135, 355, 397
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 2 cut(s) 78, 427
Cfr10I RCCGGY 2 cut(s) 65, 425
Cfr13I GGNCC 1 cut(s) 423
CseI GACGC 1 cut(s) 307
Csp6I GTAC 4 cut(s) 97, 280, 310, 559
CviAII CATG 8 cut(s) 73, 179, 184, 202, 314, 346, 434, 755
CviQI GTAC 4 cut(s) 97, 280, 310, 559
DdeI CTNAG 4 cut(s) 81, 468, 545, 696
DpnI GATC 4 cut(s) 6, 134, 477, 528
DpnII GATC 4 cut(s) 4, 132, 475, 526
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 363, 390
EarI CTCTTC 2 cut(s) 363, 390
Eco130I CCWWGG 2 cut(s) 345, 372
Eco81I CCTNAGG 1 cut(s) 545
EcoT14I CCWWGG 2 cut(s) 345, 372
ErhI CCWWGG 2 cut(s) 345, 372
FaeI CATG 8 cut(s) 76, 182, 187, 205, 317, 349, 437, 758
FatI CATG 8 cut(s) 72, 178, 183, 201, 313, 345, 433, 754
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 651, 654
FokI GGATG 3 cut(s) 142, 362, 384
Fsp4HI GCNGC 2 cut(s) 651, 654
FspBI CTAG 3 cut(s) 197, 455, 641
GluI GCNGC 2 cut(s) 651, 654
HaeIII GGCC 1 cut(s) 425
HapII CCGG 4 cut(s) 66, 392, 426, 530
HgaI GACGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 8 cut(s) 76, 182, 187, 205, 317, 349, 437, 758
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 1 cut(s) 341
HpaII CCGG 4 cut(s) 66, 392, 426, 530
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 209, 328
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 1 cut(s) 711
HpyCH4III ACNGT 3 cut(s) 96, 368, 558
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 2 cut(s) 17, 76
HpyF3I CTNAG 4 cut(s) 81, 468, 545, 696
HpySE526I ACGT 1 cut(s) 564
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 8 cut(s) 76, 182, 187, 205, 317, 349, 437, 758
KroI GCCGGC 1 cut(s) 425
KroNI GCCGGC 1 cut(s) 427
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 4 cut(s) 4, 132, 475, 526
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 5 cut(s) 79, 405, 439, 543, 576
Lsp1109I GCAGC 2 cut(s) 637, 640
LweI GCATC 2 cut(s) 202, 340
MaeI CTAG 3 cut(s) 197, 455, 641
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 5 cut(s) 61, 186, 362, 409, 463
MalI GATC 4 cut(s) 6, 134, 477, 528
MboI GATC 4 cut(s) 4, 132, 475, 526
MboII GAAGA 6 cut(s) 29, 32, 113, 350, 377, 718
MfeI CAATTG 1 cut(s) 625
MflI RGATCY 2 cut(s) 4, 475
MhlI GDGCHC 2 cut(s) 162, 672
MluCI AATT 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 9 cut(s) 63, 76, 251, 300, 314, 364, 411, 508, 607
MroNI GCCGGC 1 cut(s) 425
MseI TTAA 4 cut(s) 270, 450, 764, 772
MslI CAYNNNNRTG 2 cut(s) 438, 665
MspI CCGG 4 cut(s) 66, 392, 426, 530
MspR9I CCNGG 1 cut(s) 393
MunI CAATTG 1 cut(s) 625
NaeI GCCGGC 1 cut(s) 427
NciI CCSGG 1 cut(s) 393
NcoI CCATGG 1 cut(s) 345
NdeII GATC 4 cut(s) 4, 132, 475, 526
NgoMIV GCCGGC 1 cut(s) 425
NlaIII CATG 8 cut(s) 76, 182, 187, 205, 317, 349, 437, 758
NlaIV GGNNCC 2 cut(s) 6, 370
NmuCI GTSAC 2 cut(s) 186, 362
NspI RCATGY 1 cut(s) 76
NspV TTCGAA 1 cut(s) 704
OliI CACNNNNGTG 1 cut(s) 665
PdiI GCCGGC 1 cut(s) 427
PfeI GAWTC 1 cut(s) 341
Pfl23II CGTACG 1 cut(s) 96
PkrI GCNGC 2 cut(s) 652, 655
PspLI CGTACG 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 6, 370
PspPI GGNCC 1 cut(s) 423
PsuI RGATCY 2 cut(s) 4, 475
RsaI GTAC 4 cut(s) 98, 281, 311, 560
RsaNI GTAC 4 cut(s) 97, 280, 310, 559
RseI CAYNNNNRTG 2 cut(s) 438, 665
SaqAI TTAA 4 cut(s) 270, 450, 764, 772
SatI GCNGC 2 cut(s) 651, 654
Sau3AI GATC 4 cut(s) 4, 132, 475, 526
Sau96I GGNCC 1 cut(s) 423
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 2 cut(s) 162, 672
SetI ASST 8 cut(s) 55, 82, 265, 378, 456, 551, 567, 646
SfaNI GCATC 2 cut(s) 202, 340
SfuI TTCGAA 1 cut(s) 704
SmiMI CAYNNNNRTG 2 cut(s) 438, 665
SmlI CTYRAG 2 cut(s) 305, 608
SmoI CTYRAG 2 cut(s) 305, 608
Sse9I AATT 1 cut(s) 625
SspMI CTAG 3 cut(s) 197, 455, 641
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 2 cut(s) 345, 372
TaaI ACNGT 3 cut(s) 96, 368, 558
TaiI ACGT 1 cut(s) 567
TaqI TCGA 2 cut(s) 210, 704
TaqII GACCGA 1 cut(s) 725
TasI AATT 1 cut(s) 625
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 4 cut(s) 270, 450, 764, 772
Tru9I TTAA 4 cut(s) 270, 450, 764, 772
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 2 cut(s) 186, 362
TseI GCWGC 2 cut(s) 650, 653
Tsp45I GTSAC 2 cut(s) 186, 362
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 1 cut(s) 300
XceI RCATGY 1 cut(s) 76
XspI CTAG 3 cut(s) 197, 455, 641
ZraI GACGTC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.