MD03G1107500.v1.1

Fasciclin-like arabinogalactan protein 20

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0020360
Physical Location & Seq
Reverse (-)
9261875 .. 9262546
672 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1107500.v1.1.491

Sequence Viewer

Length: 672 bp
ATGCAAGCTGATGCCGTCCAACCCTACCGAGAAACGAACCAACGCGAACCATCCGAGATAATCAACGGCGGTTTGGTATCAGTCATCCTCTCCGACAAAGGGTATCATGCCATGTCACTTACCCTAGACATCCTTCTTGAGGCTATAAACCCTAACAGCACTGTTACCCTCTTTTGCCCACAAGACAAAGCTTTCTTCAACTCCAAGTACCCACAGCCCCCATTGACACTCCTTAAGTACCATGCTGTTCCCTTCAAGGTGGACAAAGCTTCCATGGAGGTCTCCTTCCGTCACGGTTCCAAGGTCGACACTCTCCTGCCCGGTCATCCTCTCGTCGTTACTTCCCTACCGGCTGGCACGTATGGATATGCTTCTCTTAACCTAGTCAAAGTCACTGAATGGGATCTCTATAACAATGGACGGCTGATTGTTCACGGGGTTGAAGACCTGTTTGATCCGGCTTTTCAAACCCTAAGGTATCCAGAGTACGACGTGGTTGTGAAAGATGTTGTTAGTTCTGGTGGAGTTTCTTGGCTCAAGGAGGCAACAGAGAATTGGTTTCTTGTACTAGCTCTAGCGGCTGCTTCCACTTGTGCGCTCGTTCTTGTATTTTTCTTTTGTGCAAAGCCTTCGAAGATGGATGATTTTCACTATTATCCTTTGTACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

224

Amino Acids

24.94

Weight (kDa)

5.45

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020360)

Species Orthologous Gene IDs
malus_domestica MD03G1035100.v1.1 MD03G1107500.v1.1 MD15G1046300.v1.1
prunus_persica Prupe.1G100500_v2.0.a1 Prupe.1G100600_v2.0.a1
pyrus_communis pycom08g04010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 69, 578
AclWI GGATC 2 cut(s) 411, 449
AfaI GTAC 5 cut(s) 209, 239, 488, 567, 665
AfiI CCNNNNNNNGG 2 cut(s) 99, 139
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 4 cut(s) 199, 256, 443, 467
AjiI CACGTC 1 cut(s) 493
AluBI AGCT 4 cut(s) 8, 191, 269, 572
AluI AGCT 4 cut(s) 8, 191, 269, 572
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 2 cut(s) 411, 449
ApeKI GCWGC 1 cut(s) 581
AspLEI GCGC 1 cut(s) 598
AsuC2I CCSGG 1 cut(s) 321
AsuII TTCGAA 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 568
BccI CCATC 2 cut(s) 58, 631
BceAI ACGGC 2 cut(s) 82, 437
BcgI CGANNNNNNTGC 2 cut(s) 612, 646
BciVI GTATCC 1 cut(s) 489
BcnI CCSGG 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 4 cut(s) 125, 383, 569, 575
BfrI CTTAAG 1 cut(s) 233
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 2 cut(s) 579, 582
BlsI GCNGC 2 cut(s) 580, 583
Bme1390I CCNGG 1 cut(s) 321
BmgBI CACGTC 1 cut(s) 493
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 632
BpuEI CTTGAG 2 cut(s) 158, 521
BpuMI CCSGG 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 273, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 139
Bse118I RCCGGY 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 273, 300
BseGI GGATG 5 cut(s) 50, 84, 129, 325, 646
BseLI CCNNNNNNNGG 2 cut(s) 99, 139
BseXI GCAGC 1 cut(s) 568
Bsh1236I CGCG 1 cut(s) 45
BsiSI CCGG 3 cut(s) 321, 350, 458
BslI CCNNNNNNNGG 2 cut(s) 99, 139
BsmAI GTCTC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 632
Bsp143I GATC 2 cut(s) 403, 454
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 2 cut(s) 69, 578
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 2 cut(s) 411, 449
BspT104I TTCGAA 1 cut(s) 632
BspTI CTTAAG 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 273, 300
BssMI GATC 2 cut(s) 403, 454
BssT1I CCWWGG 2 cut(s) 273, 300
Bst4CI ACNGT 2 cut(s) 163, 296
BstAFI CTTAAG 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 6, 355
BstDEI CTNAG 1 cut(s) 473
BstDSI CCRYGG 1 cut(s) 273
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 5 cut(s) 50, 84, 129, 325, 646
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 2 cut(s) 406, 457
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 2 cut(s) 403, 454
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 319
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 568
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
Bsu36I CCTNAGG 1 cut(s) 473
BsuI GTATCC 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 5 cut(s) 50, 84, 129, 325, 646
BtsIMutI CAGTG 2 cut(s) 159, 393
Cac8I GCNNGC 2 cut(s) 6, 355
CfoI GCGC 1 cut(s) 598
Cfr10I RCCGGY 1 cut(s) 349
Csp6I GTAC 5 cut(s) 208, 238, 487, 566, 664
CviAII CATG 4 cut(s) 107, 112, 242, 274
CviQI GTAC 5 cut(s) 208, 238, 487, 566, 664
DdeI CTNAG 1 cut(s) 473
DpnI GATC 2 cut(s) 405, 456
DpnII GATC 2 cut(s) 403, 454
Eco130I CCWWGG 2 cut(s) 273, 300
Eco31I GGTCTC 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 473
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoT14I CCWWGG 2 cut(s) 273, 300
ErhI CCWWGG 2 cut(s) 273, 300
FaeI CATG 4 cut(s) 110, 115, 245, 277
FaiI YATR 8 cut(s) 108, 113, 146, 243, 275, 363, 369, 411
FatI CATG 4 cut(s) 106, 111, 241, 273
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 579, 582
FokI GGATG 5 cut(s) 37, 71, 116, 312, 653
Fsp4HI GCNGC 2 cut(s) 579, 582
FspBI CTAG 4 cut(s) 125, 383, 569, 575
GlaI GCGC 1 cut(s) 597
GluI GCNGC 2 cut(s) 579, 582
HapII CCGG 3 cut(s) 321, 350, 458
HhaI GCGC 1 cut(s) 598
Hin1II CATG 4 cut(s) 110, 115, 245, 277
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 2 cut(s) 189, 267
HpaII CCGG 3 cut(s) 321, 350, 458
Hpy166II GTNNAC 3 cut(s) 262, 307, 433
Hpy188I TCNGA 2 cut(s) 55, 94
Hpy188III TCNNGA 2 cut(s) 137, 482
Hpy8I GTNNAC 3 cut(s) 262, 307, 433
Hpy99I CGWCG 2 cut(s) 338, 494
HpyAV CCTTC 4 cut(s) 143, 262, 295, 639
HpyCH4III ACNGT 2 cut(s) 163, 296
HpyCH4IV ACGT 2 cut(s) 359, 492
HpyCH4V TGCA 2 cut(s) 4, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpyF3I CTNAG 1 cut(s) 473
HpySE526I ACGT 2 cut(s) 359, 492
Hsp92II CATG 4 cut(s) 110, 115, 245, 277
HspAI GCGC 1 cut(s) 596
Kzo9I GATC 2 cut(s) 403, 454
LpnPI CCDG 8 cut(s) 329, 334, 339, 363, 461, 471, 495, 504
Lsp1109I GCAGC 1 cut(s) 568
MaeI CTAG 4 cut(s) 125, 383, 569, 575
MaeII ACGT 2 cut(s) 359, 492
MaeIII GTNAC 5 cut(s) 114, 163, 290, 337, 391
MalI GATC 2 cut(s) 405, 456
MboI GATC 2 cut(s) 403, 454
MboII GAAGA 3 cut(s) 187, 455, 646
MflI RGATCY 1 cut(s) 403
MluCI AATT 1 cut(s) 553
MmeI TCCRAC 2 cut(s) 43, 117
MnlI CCTC 6 cut(s) 98, 133, 179, 271, 339, 535
MseI TTAA 2 cut(s) 234, 378
MspCI CTTAAG 1 cut(s) 233
MspI CCGG 3 cut(s) 321, 350, 458
MspR9I CCNGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 578
NciI CCSGG 1 cut(s) 321
NcoI CCATGG 1 cut(s) 273
NdeII GATC 2 cut(s) 403, 454
NlaIII CATG 4 cut(s) 110, 115, 245, 277
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 3 cut(s) 114, 290, 391
NspV TTCGAA 1 cut(s) 632
PkrI GCNGC 2 cut(s) 580, 583
Ppu21I YACGTR 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 5 cut(s) 209, 239, 488, 567, 665
RsaNI GTAC 5 cut(s) 208, 238, 487, 566, 664
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 234, 378
SatI GCNGC 2 cut(s) 579, 582
Sau3AI GATC 2 cut(s) 403, 454
ScrFI CCNGG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 632
SmlI CTYRAG 3 cut(s) 137, 233, 536
SmoI CTYRAG 3 cut(s) 137, 233, 536
Sse9I AATT 1 cut(s) 553
SsiI CCGC 2 cut(s) 69, 578
SspMI CTAG 4 cut(s) 125, 383, 569, 575
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 2 cut(s) 273, 300
TaaI ACNGT 2 cut(s) 163, 296
TaiI ACGT 2 cut(s) 362, 495
TaqI TCGA 2 cut(s) 306, 632
TasI AATT 1 cut(s) 553
TatI WGTACW 2 cut(s) 565, 663
TauI GCSGC 1 cut(s) 581
Tru1I TTAA 2 cut(s) 234, 378
Tru9I TTAA 2 cut(s) 234, 378
TscAI CASTG 2 cut(s) 166, 400
TseFI GTSAC 3 cut(s) 114, 290, 391
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 3 cut(s) 114, 290, 391
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 2 cut(s) 166, 400
Vha464I CTTAAG 1 cut(s) 233
XagI CCTNNNNNAGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 4 cut(s) 125, 383, 569, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.