Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0020360

Physical Location & Seq

Genomic Coordinates Reverse (-)

3178406 .. 3179059

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1046300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGATTCCAAGTTTGCACTGATCTGTTTTCTTCTCTCTTCAATTCTCTTTGTTACCAGTCAAGCTGTTCAACCATATGAACAAACGAGCCAACCGGAACAGTCAGGAATCAACATGGGGAAGGTATCCAGCGTACTTTCCGACAAAGGGTATCAGGCCATGGCACTAACCCTAGGCACCATTCTTGAGGCTGTGATATTTCCAACCCTAAACTTAAATCACAGCACCAGTCTTACCCTCTTTTGCCCTAAAGACCAAGCTTTCTTTAACTCCAAGTATGGACAGCCTCCGTTGACACTATTTAAGTATCATGTTGTGCCGTTCAAGATGGACAAAGATTCAGTAGAGGCGTCTTTCGATCATGGTTCCAAAGTCGACACTCTCCTGCTCGATCGTCCTCTCGTTCTTACATCCCTGCCCACCGGCACTGGCGGATACGCTTCTCTCAACCTAGTCAAAGTCACGGAGTGGGATGTGTACAATGACGGACGACTGATTGTTATTGAGATTGAGAACTTCTTTGATCCGGCTTTCCAAACCCTAAGGTATCCGCAATATGACGTGATGAACGTGAAAGACGGAACTTCTCAAGGATTTCTGGGGCTGAAAGGTGCATTAGGGATTATTAGTCGGTTTCTCTTTCTGCAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

218

Amino Acids

24.07

Weight (kDa)

5.31

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020360)

Species	Orthologous Gene IDs
malus_domestica	MD03G1035100.v1.1 MD03G1107500.v1.1 MD15G1046300.v1.1
prunus_persica	Prupe.1G100500_v2.0.a1 Prupe.1G100600_v2.0.a1
pyrus_communis	pycom08g04010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	375
AciI	CCGC	2 cut(s)	432, 551
AclWI	GGATC	1 cut(s)	518
AcyI	GRCGYC	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	468
AfaI	GTAC	2 cut(s)	135, 479
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	42, 71, 325
AjiI	CACGTC	1 cut(s)	562
AluBI	AGCT	2 cut(s)	65, 260
AluI	AGCT	2 cut(s)	65, 260
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	1 cut(s)	156
AspA2I	CCTAGG	1 cut(s)	172
AvrII	CCTAGG	1 cut(s)	172
AxyI	CCTNAGG	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	176
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	304
BciVI	GTATCC	3 cut(s)	136, 428, 558
BfaI	CTAG	2 cut(s)	173, 452
BfmI	CTRYAG	1 cut(s)	644
BfuI	GTATCC	3 cut(s)	136, 428, 558
BlnI	CCTAGG	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	562
BmiI	GGNNCC	2 cut(s)	178, 367
BpuEI	CTTGAG	2 cut(s)	206, 573
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	159, 172
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	3 cut(s)	57, 228, 433
Bse21I	CCTNAGG	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	159, 172
BseGI	GGATG	2 cut(s)	410, 478
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseNI	ACTGG	3 cut(s)	57, 228, 433
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	3 cut(s)	95, 423, 527
BslI	CCNNNNNNNGG	1 cut(s)	147
BsnI	GGCC	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	21, 358, 391, 523
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	432, 551
BspANI	GGCC	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	178, 367
BspMAI	CTGCAG	1 cut(s)	648
BspPI	GGATC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	422
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	3 cut(s)	57, 228, 433
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	159, 172
BssMI	GATC	4 cut(s)	21, 358, 391, 523
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	2 cut(s)	159, 172
Bst4CI	ACNGT	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	477
BstDEI	CTNAG	1 cut(s)	542
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	410, 478
BstKTI	GATC	4 cut(s)	24, 361, 394, 526
BstMBI	GATC	4 cut(s)	21, 358, 391, 523
BstMCI	CGRYCG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	542
BsuI	GTATCC	3 cut(s)	136, 428, 558
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	410, 478
BtsIMutI	CAGTG	2 cut(s)	17, 426
Cfr10I	RCCGGY	1 cut(s)	422
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	134, 478
CviAII	CATG	4 cut(s)	115, 160, 311, 362
CviJI	RGCY	8 cut(s)	65, 90, 158, 191, 260, 286, 530, 604
CviKI_1	RGCY	8 cut(s)	65, 90, 158, 191, 260, 286, 530, 604
CviQI	GTAC	2 cut(s)	134, 478
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	4 cut(s)	23, 360, 393, 525
DpnII	GATC	4 cut(s)	21, 358, 391, 523
DraIII	CACNNNGTG	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	447
Eco130I	CCWWGG	2 cut(s)	159, 172
Eco81I	CCTNAGG	1 cut(s)	542
EcoT14I	CCWWGG	2 cut(s)	159, 172
ErhI	CCWWGG	2 cut(s)	159, 172
FaeI	CATG	4 cut(s)	118, 163, 314, 365
FaiI	YATR	8 cut(s)	76, 78, 116, 161, 279, 312, 363, 558
FatI	CATG	4 cut(s)	114, 159, 310, 361
FauNDI	CATATG	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	375
FokI	GGATG	2 cut(s)	397, 485
FspBI	CTAG	2 cut(s)	173, 452
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	3 cut(s)	95, 423, 527
HgaI	GACGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	118, 163, 314, 365
HincII	GTYRAC	2 cut(s)	294, 376
HindII	GTYRAC	2 cut(s)	294, 376
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	3 cut(s)	5, 108, 338
HpaII	CCGG	3 cut(s)	95, 423, 527
Hpy166II	GTNNAC	3 cut(s)	294, 376, 478
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	105, 185, 325
Hpy8I	GTNNAC	3 cut(s)	294, 376, 478
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4IV	ACGT	2 cut(s)	561, 570
HpyCH4V	TGCA	3 cut(s)	17, 614, 646
HpyF3I	CTNAG	1 cut(s)	542
HpySE526I	ACGT	2 cut(s)	561, 570
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	4 cut(s)	118, 163, 314, 365
Kzo9I	GATC	4 cut(s)	21, 358, 391, 523
MaeI	CTAG	2 cut(s)	173, 452
MaeII	ACGT	2 cut(s)	561, 570
MaeIII	GTNAC	2 cut(s)	52, 460
MalI	GATC	4 cut(s)	23, 360, 393, 525
MboI	GATC	4 cut(s)	21, 358, 391, 523
MboII	GAAGA	2 cut(s)	23, 30
MluCI	AATT	2 cut(s)	42, 649
MmeI	TCCRAC	2 cut(s)	165, 227
MnlI	CCTC	5 cut(s)	181, 248, 297, 340, 408
MseI	TTAA	3 cut(s)	215, 267, 303
MspI	CCGG	3 cut(s)	95, 423, 527
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	4 cut(s)	21, 358, 391, 523
NlaIII	CATG	4 cut(s)	118, 163, 314, 365
NlaIV	GGNNCC	2 cut(s)	178, 367
NmuCI	GTSAC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	5, 108, 338
Ple19I	CGATCG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	178, 367
PstI	CTGCAG	1 cut(s)	648
PvuI	CGATCG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	135, 479
RsaNI	GTAC	2 cut(s)	134, 478
SalI	GTCGAC	1 cut(s)	374
SaqAI	TTAA	3 cut(s)	215, 267, 303
Sau3AI	GATC	4 cut(s)	21, 358, 391, 523
SetI	ASST	8 cut(s)	67, 126, 262, 453, 548, 564, 573, 613
SfcI	CTRYAG	1 cut(s)	644
SmlI	CTYRAG	2 cut(s)	185, 588
SmoI	CTYRAG	2 cut(s)	185, 588
Sse9I	AATT	2 cut(s)	42, 649
SsiI	CCGC	2 cut(s)	432, 551
SspMI	CTAG	2 cut(s)	173, 452
StyI	CCWWGG	2 cut(s)	159, 172
TaaI	ACNGT	1 cut(s)	102
TaiI	ACGT	2 cut(s)	564, 573
TaqI	TCGA	3 cut(s)	357, 375, 390
TasI	AATT	2 cut(s)	42, 649
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	5, 108, 338
Tru1I	TTAA	3 cut(s)	215, 267, 303
Tru9I	TTAA	3 cut(s)	215, 267, 303
TscAI	CASTG	2 cut(s)	24, 433
TseFI	GTSAC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	93, 581
TspGWI	ACGGA	4 cut(s)	279, 479, 501, 594
TspRI	CASTG	2 cut(s)	24, 433
XmaJI	CCTAGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	2 cut(s)	173, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.