Prupe.1G100500_v2.0.a1

Fasciclin-like arabinogalactan protein 20

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0020360
Physical Location & Seq
Reverse (-)
8005516 .. 8006416
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G100500.1

Sequence Viewer

Length: 738 bp
ATGGCTTCCAACTTTGCATTCTTTTATCTTCTTCTACTTCTCTCTTCAACTCTCTTCATAACCATTCGAGCCGCCCGACCCTACGAACAACCAAACCAACCCAAACCATCAGGAGGAATCAGCGTTGATTTGGTATCAAGCGTGCTCTCTGACAAAGGGTATCATGCCATGTCACTAACCCTAGAAGCCGTTCTTGAGGCTTTGACGCCAACCCATTTCATAAACCACAACACCACTCTTACCCTCTTTTGCCCTCAAGACCAAGCTTTCTTGAACTCCAAGTATCCTCGGCCTCCCTTGACACTCCTCAGGTACCATGTTGTGCCATTCAAGATCGACAAAGATACCATGGAGGCAACTTTTCATCATGGTTCCATGGTTGACACTCTTCTGCCTGGTCATCCTCTCGTTGTTACTTCCCCAACTGGCACCGGCAGATACGCTTCTCTTAACCTAGTAAAAGTCACTGAATGGGATCTTTACAATGATGGACGACTGATTATTCATGGGGTTGAGGACTTCTTTGACCCCGCTTTCCAAATACTGAGATATCCAATATACGACGTGATTAACATTCAAGAAAATCCTCGAGAAGGATTTTCTATGCTGAAAGATGCACTAGAGATTATTAGCTTGTTTATCTTGCTAGCACTGGTGGCTGTTTTCACTTATGTACTAATTCGTTCATTTATTTTTCCTCAAAAGCCAAGGGATGGAGAATATGCACTTTTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

246

Amino Acids

27.73

Weight (kDa)

5.87

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020360)

Species Orthologous Gene IDs
malus_domestica MD03G1035100.v1.1 MD03G1107500.v1.1 MD15G1046300.v1.1
prunus_persica Prupe.1G100500_v2.0.a1 Prupe.1G100600_v2.0.a1
pyrus_communis pycom08g04010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 2 cut(s) 312, 428
AccB7I CCANNNNNTGG 1 cut(s) 713
AciI CCGC 2 cut(s) 72, 531
AclWI GGATC 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 2 cut(s) 314, 675
AfiI CCNNNNNNNGG 3 cut(s) 113, 593, 713
AgsI TTSAA 4 cut(s) 48, 274, 331, 578
AjiI CACGTC 1 cut(s) 565
AjnI CCWGG 1 cut(s) 394
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 266, 633
AluI AGCT 2 cut(s) 266, 633
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 189
Asp718I GGTACC 1 cut(s) 312
AsuNHI GCTAGC 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 588
AxyI CCTNAGG 1 cut(s) 308
BanI GGYRCC 2 cut(s) 312, 428
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 3 cut(s) 115, 482, 707
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 396
BciVI GTATCC 1 cut(s) 294
BfaI CTAG 4 cut(s) 182, 455, 620, 647
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 396
BmeT110I CYCGRG 1 cut(s) 588
BmgBI CACGTC 1 cut(s) 565
BmiI GGNNCC 3 cut(s) 314, 373, 430
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 604
BmtI GCTAGC 1 cut(s) 650
BpuEI CTTGAG 2 cut(s) 215, 240
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 4 cut(s) 287, 348, 375, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 593, 713
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 2 cut(s) 430, 657
Bse21I CCTNAGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 4 cut(s) 287, 348, 375, 707
BseGI GGATG 2 cut(s) 400, 718
BseLI CCNNNNNNNGG 3 cut(s) 113, 593, 713
BseMII CTCAG 2 cut(s) 322, 536
BseNI ACTGG 2 cut(s) 430, 657
BseRI GAGGAG 1 cut(s) 296
BshFI GGCC 1 cut(s) 292
BshNI GGYRCC 2 cut(s) 312, 428
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 1 cut(s) 432
BslI CCNNNNNNNGG 3 cut(s) 113, 593, 713
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 333, 475
Bsp19I CCATGG 2 cut(s) 348, 375
BspACI CCGC 2 cut(s) 72, 531
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 2 cut(s) 321, 537
BspLI GGNNCC 3 cut(s) 314, 373, 430
BspOI GCTAGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 483
BspT107I GGYRCC 2 cut(s) 312, 428
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 2 cut(s) 430, 657
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 4 cut(s) 287, 348, 375, 707
BssMI GATC 2 cut(s) 333, 475
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 3 cut(s) 348, 375, 707
Bst2UI CCWGG 1 cut(s) 396
Bst6I CTCTTC 3 cut(s) 49, 59, 393
BstACI GRCGYC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 143, 648
BstDEI CTNAG 2 cut(s) 308, 545
BstDSI CCRYGG 2 cut(s) 348, 375
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 400, 718
BstKTI GATC 2 cut(s) 336, 478
BstMBI GATC 2 cut(s) 333, 475
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu36I CCTNAGG 1 cut(s) 308
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 1 cut(s) 292
BtgI CCRYGG 2 cut(s) 348, 375
BtrI CACGTC 1 cut(s) 565
BtsCI GGATG 2 cut(s) 400, 718
BtsIMutI CAGTG 2 cut(s) 465, 650
Cac8I GCNNGC 2 cut(s) 143, 648
Cfr10I RCCGGY 1 cut(s) 431
CseI GACGC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 313, 674
CviAII CATG 7 cut(s) 164, 169, 317, 349, 368, 376, 506
CviJI RGCY 9 cut(s) 5, 71, 188, 200, 266, 292, 633, 659, 706
CviKI_1 RGCY 9 cut(s) 5, 71, 188, 200, 266, 292, 633, 659, 706
CviQI GTAC 2 cut(s) 313, 674
DdeI CTNAG 2 cut(s) 308, 545
DpnI GATC 2 cut(s) 335, 477
DpnII GATC 2 cut(s) 333, 475
Eam1104I CTCTTC 3 cut(s) 49, 59, 393
EarI CTCTTC 3 cut(s) 49, 59, 393
Eco130I CCWWGG 3 cut(s) 348, 375, 707
Eco32I GATATC 1 cut(s) 551
Eco81I CCTNAGG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 588
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 394
EcoRV GATATC 1 cut(s) 551
EcoT14I CCWWGG 3 cut(s) 348, 375, 707
ErhI CCWWGG 3 cut(s) 348, 375, 707
FaeI CATG 7 cut(s) 167, 172, 320, 352, 371, 379, 509
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 7 cut(s) 163, 168, 316, 348, 367, 375, 505
FauI CCCGC 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 387, 725
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 4 cut(s) 182, 455, 620, 647
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 292
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 7 cut(s) 167, 172, 320, 352, 371, 379, 509
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 117
HpaII CCGG 1 cut(s) 432
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 7 cut(s) 111, 194, 257, 271, 331, 578, 590
Hpy8I GTNNAC 1 cut(s) 382
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 1 cut(s) 587
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 3 cut(s) 17, 617, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 2 cut(s) 308, 545
HpySE526I ACGT 1 cut(s) 564
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 7 cut(s) 167, 172, 320, 352, 371, 379, 509
KpnI GGTACC 1 cut(s) 316
Kzo9I GATC 2 cut(s) 333, 475
LpnPI CCDG 7 cut(s) 96, 295, 381, 408, 411, 445, 638
LweI GCATC 1 cut(s) 604
MaeI CTAG 4 cut(s) 182, 455, 620, 647
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 3 cut(s) 171, 412, 463
MalI GATC 2 cut(s) 335, 477
MboI GATC 2 cut(s) 333, 475
MboII GAAGA 5 cut(s) 20, 23, 36, 46, 380
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 678
MmeI TCCRAC 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 3 cut(s) 450, 570, 736
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 656
NcoI CCATGG 2 cut(s) 348, 375
NdeII GATC 2 cut(s) 333, 475
NheI GCTAGC 1 cut(s) 646
NlaIII CATG 7 cut(s) 167, 172, 320, 352, 371, 379, 509
NlaIV GGNNCC 3 cut(s) 314, 373, 430
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 171, 463
PaeR7I CTCGAG 1 cut(s) 588
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PctI GAATGC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 117
PflMI CCANNNNNTGG 1 cut(s) 713
PkrI GCNGC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 3 cut(s) 314, 373, 430
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 2 cut(s) 314, 675
RsaNI GTAC 2 cut(s) 313, 674
SaqAI TTAA 3 cut(s) 450, 570, 736
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 333, 475
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 1 cut(s) 147
SetI ASST 5 cut(s) 268, 314, 456, 567, 635
SfaNI GCATC 1 cut(s) 604
Sfr274I CTCGAG 1 cut(s) 588
SlaI CTCGAG 1 cut(s) 588
SmlI CTYRAG 3 cut(s) 194, 255, 588
SmoI CTYRAG 3 cut(s) 194, 255, 588
Sse9I AATT 1 cut(s) 678
SsiI CCGC 2 cut(s) 72, 531
SspMI CTAG 4 cut(s) 182, 455, 620, 647
StyD4I CCNGG 1 cut(s) 394
StyI CCWWGG 3 cut(s) 348, 375, 707
TaiI ACGT 1 cut(s) 567
TaqI TCGA 3 cut(s) 67, 336, 589
TasI AATT 1 cut(s) 678
TatI WGTACW 1 cut(s) 673
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 450, 570, 736
Tru9I TTAA 3 cut(s) 450, 570, 736
TscAI CASTG 2 cut(s) 472, 657
TseFI GTSAC 2 cut(s) 171, 463
Tsp45I GTSAC 2 cut(s) 171, 463
TspDTI ATGAA 5 cut(s) 46, 208, 353, 494, 675
TspRI CASTG 2 cut(s) 472, 657
Van91I CCANNNNNTGG 1 cut(s) 713
XagI CCTNNNNNAGG 1 cut(s) 591
XhoI CTCGAG 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 4 cut(s) 182, 455, 620, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.