Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0020360

Physical Location & Seq

Genomic Coordinates Forward (+)

8007163 .. 8007975

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTTCCAAGTTTGCGATATCATGTTTTCTCCTTCTACTTGCATCTTCAACTCTCTTTATTACCATTCAAGGTGCCCAACCGTATCAACAAATACACCAACCCAAATCATCAGCCATAAATCTTGGTTGGGTGTCAGCTGTACTCTCTCACAAAGGCTATCGTGCCATGGCACTAACCCTAGAAACTGTTCTTGAGCCTTTGATCCGAACCCAATTCATCAACCACAGCACCACTCTTACCCTCTTTTGTCCTCAAGACCAAGCTTTCTTTAACTCCAAGTATCCTCAGCCTCCTCCATTGACGCTCCTCAAGTACCATATTGTGCCATTCAAGATCGACCCACATACCATGGAGGCATCTTTTCATCTTGGTTCCAAAGTCGAAACTCTTCTTCCGGGTCATCCTCTTGTTGTTACTTCCCTACCCGGCACCGGTGCATCAAACCCTTCTCTTAACCAAGTCAAAGTCACAGACTGGGTTATCTTCAACAATGGACGACTCATTGTTCATGGAGTTGAAAACTTCTTCGATCCGGAGTACGACGTTGTGATTGCGAAGGAGGTTCCTTCTCGTGGATTTTCTGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

198

Amino Acids

21.85

Weight (kDa)

7.09

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020360)

Species	Orthologous Gene IDs
malus_domestica	MD03G1035100.v1.1 MD03G1107500.v1.1 MD15G1046300.v1.1
prunus_persica	Prupe.1G100500_v2.0.a1 Prupe.1G100600_v2.0.a1
pyrus_communis	pycom08g04010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	74, 431
AccIII	TCCGGA	1 cut(s)	535
AclWI	GGATC	2 cut(s)	199, 527
AfaI	GTAC	3 cut(s)	144, 317, 542
AfiI	CCNNNNNNNGG	2 cut(s)	434, 575
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	5 cut(s)	51, 71, 334, 490, 521
AluBI	AGCT	2 cut(s)	140, 266
AluI	AGCT	2 cut(s)	140, 266
AlwI	GGATC	2 cut(s)	199, 527
Aor13HI	TCCGGA	1 cut(s)	535
AsiGI	ACCGGT	1 cut(s)	434
Asp700I	GAANNNNTTC	2 cut(s)	189, 390
AsuC2I	CCSGG	2 cut(s)	399, 429
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	2 cut(s)	74, 431
BauI	CACGAG	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	399, 429
BfaI	CTAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	399, 429
BmiI	GGNNCC	4 cut(s)	76, 376, 433, 567
BmrFI	CCNGG	2 cut(s)	399, 429
BmrI	ACTGGG	1 cut(s)	487
BmsI	GCATC	3 cut(s)	53, 368, 449
BmuI	ACTGGG	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	3 cut(s)	215, 240, 296
BpuMI	CCSGG	2 cut(s)	399, 429
BsaJI	CCNNGG	2 cut(s)	168, 351
BsaWI	WCCGGW	2 cut(s)	434, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 575
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	482
BseAI	TCCGGA	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	168, 351
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	434, 575
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	2 cut(s)	285, 299
BseSI	GKGCMC	1 cut(s)	79
BshNI	GGYRCC	2 cut(s)	74, 431
BshTI	ACCGGT	1 cut(s)	434
BsiSI	CCGG	4 cut(s)	398, 429, 435, 536
BslI	CCNNNNNNNGG	2 cut(s)	434, 575
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	204, 336, 532
Bsp19I	CCATGG	2 cut(s)	168, 351
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	1 cut(s)	535
BspLI	GGNNCC	4 cut(s)	76, 376, 433, 567
BspPI	GGATC	2 cut(s)	199, 527
BspT107I	GGYRCC	2 cut(s)	74, 431
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	482
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	168, 351
BssMI	GATC	3 cut(s)	204, 336, 532
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	2 cut(s)	168, 351
Bst2BI	CACGAG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	84, 190
Bst6I	CTCTTC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	2 cut(s)	168, 351
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	3 cut(s)	207, 339, 535
BstMBI	GATC	3 cut(s)	204, 336, 532
BstSCI	CCNGG	2 cut(s)	397, 427
BstSLI	GKGCMC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	294
BtgI	CCRYGG	2 cut(s)	168, 351
BtsCI	GGATG	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	434
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	143, 316, 541
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	4 cut(s)	24, 169, 352, 512
CviJI	RGCY	7 cut(s)	5, 116, 140, 159, 199, 266, 292
CviKI_1	RGCY	7 cut(s)	5, 116, 140, 159, 199, 266, 292
CviQI	GTAC	3 cut(s)	143, 316, 541
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	3 cut(s)	206, 338, 534
DpnII	GATC	3 cut(s)	204, 336, 532
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	168, 351
Eco32I	GATATC	1 cut(s)	21
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	2 cut(s)	168, 351
ErhI	CCWWGG	2 cut(s)	168, 351
FaeI	CATG	4 cut(s)	27, 172, 355, 515
FaiI	YATR	7 cut(s)	25, 119, 170, 321, 348, 353, 513
FatI	CATG	4 cut(s)	23, 168, 351, 511
FokI	GGATG	1 cut(s)	390
FspBI	CTAG	1 cut(s)	182
HapII	CCGG	4 cut(s)	398, 429, 435, 536
HgaI	GACGC	1 cut(s)	313
Hin1II	CATG	4 cut(s)	27, 172, 355, 515
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	4 cut(s)	398, 429, 435, 536
Hpy188I	TCNGA	3 cut(s)	209, 586, 593
Hpy188III	TCNNGA	4 cut(s)	194, 257, 334, 536
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	4 cut(s)	44, 459, 553, 579
HpyCH4III	ACNGT	2 cut(s)	84, 190
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	2 cut(s)	44, 440
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	4 cut(s)	27, 172, 355, 515
Kpn2I	TCCGGA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	204, 336, 532
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	5 cut(s)	411, 442, 448, 463, 549
LweI	GCATC	3 cut(s)	53, 368, 449
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	415, 469
MalI	GATC	3 cut(s)	206, 338, 534
MboI	GATC	3 cut(s)	204, 336, 532
MboII	GAAGA	5 cut(s)	39, 383, 386, 478, 520
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	9 cut(s)	254, 264, 297, 303, 306, 320, 349, 417, 556
MroI	TCCGGA	1 cut(s)	535
MroXI	GAANNNNTTC	2 cut(s)	189, 390
MseI	TTAA	2 cut(s)	273, 456
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	4 cut(s)	398, 429, 435, 536
MspR9I	CCNGG	2 cut(s)	399, 429
NciI	CCSGG	2 cut(s)	399, 429
NcoI	CCATGG	2 cut(s)	168, 351
NdeII	GATC	3 cut(s)	204, 336, 532
NlaIII	CATG	4 cut(s)	27, 172, 355, 515
NlaIV	GGNNCC	4 cut(s)	76, 376, 433, 567
NmuCI	GTSAC	1 cut(s)	469
PdmI	GAANNNNTTC	2 cut(s)	189, 390
PinAI	ACCGGT	1 cut(s)	434
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PspN4I	GGNNCC	4 cut(s)	76, 376, 433, 567
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	3 cut(s)	144, 317, 542
RsaNI	GTAC	3 cut(s)	143, 316, 541
SaqAI	TTAA	2 cut(s)	273, 456
Sau3AI	GATC	3 cut(s)	204, 336, 532
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	2 cut(s)	399, 429
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	5 cut(s)	76, 142, 268, 549, 567
SfaNI	GCATC	3 cut(s)	53, 368, 449
SgrAI	CRCCGGYG	1 cut(s)	434
SmlI	CTYRAG	3 cut(s)	194, 255, 311
SmoI	CTYRAG	3 cut(s)	194, 255, 311
Sse9I	AATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	397, 427
StyI	CCWWGG	2 cut(s)	168, 351
TaaI	ACNGT	2 cut(s)	84, 190
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	3 cut(s)	339, 384, 531
TasI	AATT	1 cut(s)	215
TatI	WGTACW	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	273, 456
Tru9I	TTAA	2 cut(s)	273, 456
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	208, 356, 500
XmnI	GAANNNNTTC	2 cut(s)	189, 390
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.