Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0020251

Physical Location & Seq

Genomic Coordinates Forward (+)

20394609 .. 20394773

Gene Structure 165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1163700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGTTTGCTCTAGTTTTTGTTGTTTTTTATGTTGTAACGGTTTTTCTTTATCCATGGGCAATGAGTTTCGATGTATTGGGAGTATCCGTATTCATAAAAGATTTACTTTTCGTGCTTATCCTAATAGTTGGTTCAATTTATGCATGGCGAAAAGGACCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008137 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0030964 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050136 GO:0055114 GO:0098796 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Oxidored_q4

Protein Analysis

55

Amino Acids

6.18

Weight (kDa)

8.14

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q4	PF00507	1 - 52	1.7e-12	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00440
malus_domestica	MD03G1163700.v1.1 MD11G1295600.v1.1
rosa_chinensis	RchiOBHm_CPg0502161
rosa_roxburghii	Rroxscaffold_1G00030900
rosa_wichuraiana	Rw7G039190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	2 cut(s)	54, 144
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	57, 147
FaiI	YATR	6 cut(s)	30, 55, 95, 141, 145, 163
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	2 cut(s)	53, 143
FspBI	CTAG	1 cut(s)	11
Hin1II	CATG	2 cut(s)	57, 147
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	57, 147
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	34
MluCI	AATT	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	53
NlaIII	CATG	2 cut(s)	57, 147
NsiI	ATGCAT	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	155
Sau96I	GGNCC	1 cut(s)	155
SgeI	CNNG	4 cut(s)	23, 66, 124, 156
SinI	GGWCC	1 cut(s)	155
Sse9I	AATT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	155
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.