Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0020251

Physical Location & Seq

Genomic Coordinates Reverse (-)

41589535 .. 41589897

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTTCTGCTTTACGAATATGATTTTTTCTGGGCATTTCTGATAGTTTCAAGTGTTATTCCTATTTTGGCATTTTTCATTTCCGGAGTTTTAGCCCCGATTAACAAAGGGCCAGAAAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGGGATGCTTGGTTACAATTTCGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTCGATGTATTGGGAGTATCCGTATTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTTGGTTCAATTTATGCATGGCGAAAAGGAGCATTGGAATGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008137 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0030964 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050136 GO:0055114 GO:0098796 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Oxidored_q4

Protein Analysis

120

Amino Acids

13.83

Weight (kDa)

4.41

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q4	PF00507	23 - 119	3.1e-36	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00440
malus_domestica	MD03G1163700.v1.1 MD11G1295600.v1.1
rosa_chinensis	RchiOBHm_CPg0502161
rosa_roxburghii	Rroxscaffold_1G00030900
rosa_wichuraiana	Rw7G039190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	51, 224, 324
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	175
BciVI	GTATCC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	110
BmsI	GCATC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse3DI	GCAATG	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	84
BsnI	GGCC	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	175
Bsp13I	TCCGGA	1 cut(s)	83
Bsp19I	CCATGG	1 cut(s)	242
BspANI	GGCC	1 cut(s)	112
BspEI	TCCGGA	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	110
CviAII	CATG	2 cut(s)	243, 333
CviJI	RGCY	3 cut(s)	95, 112, 290
CviKI_1	RGCY	3 cut(s)	95, 112, 290
DdeI	CTNAG	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	246, 336
FaiI	YATR	8 cut(s)	21, 132, 189, 191, 244, 284, 330, 334
FatI	CATG	2 cut(s)	242, 332
FokI	GGATG	1 cut(s)	170
FspBI	CTAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	2 cut(s)	246, 336
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	134, 177
HpaII	CCGG	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	84, 138
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	246, 336
Kpn2I	TCCGGA	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	3 cut(s)	16, 97, 126
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	165
MluCI	AATT	4 cut(s)	170, 294, 312, 324
Mph1103I	ATGCAT	1 cut(s)	334
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	2 cut(s)	102, 293
MslI	CAYNNNNRTG	1 cut(s)	352
MspI	CCGG	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	242
NlaIII	CATG	2 cut(s)	246, 336
NsiI	ATGCAT	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	134, 177
PspPI	GGNCC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	102, 293
Sau96I	GGNCC	1 cut(s)	110
SetI	ASST	1 cut(s)	292
SfaNI	GCATC	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	352
Sse9I	AATT	4 cut(s)	170, 294, 312, 324
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	3 cut(s)	125, 175, 258
TasI	AATT	4 cut(s)	170, 294, 312, 324
TfiI	GAWTC	2 cut(s)	134, 177
Tru1I	TTAA	2 cut(s)	102, 293
Tru9I	TTAA	2 cut(s)	102, 293
TspDTI	ATGAA	2 cut(s)	67, 147
TspGWI	ACGGA	2 cut(s)	170, 265
XspI	CTAG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.