MD03G1170500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
23125176 .. 23125562
387 bp
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UTR
Exon/CDS
Intron
MD03G1170500.v1.1.491

Sequence Viewer

Length: 387 bp
ATGGATTCCAAAGCCAAAGGTTTTCAGGGAAATAATGGAATGAGAACAAGAAGCTTTCGTGATGAAGACTATACCAACAGGAGAGTGTTTCTGCGGAGCTATCCTCTTGACTGGGAATTAGGTGGAGATGATAAAAATCATAAAGAAGCTGCCGCCGCTGGTGGTGGTGGTTCAACAGATAAGATGAGGTCCATGAGGACCGGTAAGGACGACTGCAGCAGCGGCAGATTGGAGAAGCCGATGATCCGAAGGATAATCCTGTCAGTGTTTCATTGGGGTGGGGGAAAGGTGCTGGTGTTGAGGAGGTTTAAAAACAAGCTTGCTATTTATGTCATCTCTTGTATCCCTATTGGCTTTAAGCCTCCCACAACCCTAATTTCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.31

Weight (kDa)

10.12

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g28341
malus_domestica MD03G1170500.v1.1
prunus_persica Prupe.4G256400_v2.0.a1
rosa_samantha Rh5AG339400 Rh5BG349300 Rh5CG376200 Rh5DG362200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 94, 153, 156, 222
AclWI GGATC 1 cut(s) 238
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 1 cut(s) 174
AluBI AGCT 4 cut(s) 54, 99, 149, 319
AluI AGCT 4 cut(s) 54, 99, 149, 319
AlwI GGATC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 149, 216, 219
AsiGI ACCGGT 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 189, 198
AvaII GGWCC 2 cut(s) 189, 198
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 136, 228, 231
BciVI GTATCC 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 214
BfuI GTATCC 1 cut(s) 353
BisI GCNGC 6 cut(s) 150, 153, 156, 217, 220, 223
BlsI GCNGC 6 cut(s) 151, 154, 157, 218, 221, 224
Bme18I GGWCC 2 cut(s) 189, 198
BmgT120I GGNCC 2 cut(s) 189, 198
BmrI ACTGGG 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BsaBI GATNNNNATC 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 135
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 3 cut(s) 136, 228, 231
BshTI ACCGGT 1 cut(s) 200
BsiSI CCGG 1 cut(s) 201
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 4 cut(s) 94, 153, 156, 222
BspMAI CTGCAG 1 cut(s) 218
BspPI GGATC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 321
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 155, 222
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 136, 228, 231
BstV2I GAAGAC 1 cut(s) 72
BsuI GTATCC 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 189, 198
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 1 cut(s) 193
CviJI RGCY 8 cut(s) 14, 54, 99, 149, 238, 319, 354, 361
CviKI_1 RGCY 8 cut(s) 14, 54, 99, 149, 238, 319, 354, 361
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
DraI TTTAAA 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 189, 198
FaeI CATG 1 cut(s) 196
FaiI YATR 4 cut(s) 72, 141, 194, 330
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 6 cut(s) 150, 153, 156, 217, 220, 223
Fsp4HI GCNGC 6 cut(s) 150, 153, 156, 217, 220, 223
GluI GCNGC 6 cut(s) 150, 153, 156, 217, 220, 223
HapII CCGG 1 cut(s) 201
Hin1II CATG 1 cut(s) 196
HindIII AAGCTT 2 cut(s) 52, 317
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 2 cut(s) 59, 107
HpyAV CCTTC 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 222
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 8 cut(s) 11, 64, 97, 144, 214, 272, 278, 366
Lsp1109I GCAGC 3 cut(s) 136, 228, 231
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 1 cut(s) 77
MluCI AATT 2 cut(s) 116, 375
MnlI CCTC 6 cut(s) 114, 180, 189, 294, 297, 372
MseI TTAA 2 cut(s) 309, 357
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 158, 222
MspI CCGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 155, 222
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 196
PfeI GAWTC 1 cut(s) 5
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 6 cut(s) 151, 154, 157, 218, 221, 224
PspPI GGNCC 2 cut(s) 189, 198
PstI CTGCAG 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 309, 357
SatI GCNGC 6 cut(s) 150, 153, 156, 217, 220, 223
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 189, 198
SetI ASST 9 cut(s) 22, 56, 101, 124, 151, 191, 291, 308, 321
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 2 cut(s) 189, 198
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 2 cut(s) 116, 375
SsiI CCGC 4 cut(s) 94, 153, 156, 222
TasI AATT 2 cut(s) 116, 375
TauI GCSGC 3 cut(s) 155, 158, 225
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 309, 357
Tru9I TTAA 2 cut(s) 309, 357
TscAI CASTG 1 cut(s) 270
TseI GCWGC 3 cut(s) 149, 216, 219
TspDTI ATGAA 2 cut(s) 78, 260
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 189, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.