Rh5AG339400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019686
Physical Location & Seq
Forward (+)
54955510 .. 54966998
11489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG339400.1

Sequence Viewer

Length: 408 bp
ATGGATTTGCAAGCAGGATTGGAGTACAGTGGAATGAGAACAAGAAGCTTTCGAGACGAAGATTACAATAATAATAGAAGAGTGTTCCTGAGAAGCTATCCTCTTGACTGGGAATTAAAACAAGGAGCTCCTGATCATGATCATCATGAGGAAGGCTTAAAATCAAAGCCGAACTCCAGCGAGAAATTCAGAAGCAGCAGCAGCAGAAAGAGACCCATAAAGAAGATAATCTTGTCTGTATTTCACTGGGGTGGGGGAAAGGTGGCGTTGTTGAGGAGGTTTAAACATAAGATAAAAGTAGTGAGGTTTCCTTCCATTGAAAGTTTAAAAATAAGCAAGGTGAAATCGGCCCCCTCGCAAGTTGGGGCGGAAGATGAAGATGATTTCCCTAACATGGCTGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.56

Weight (kDa)

9.73

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g28341
malus_domestica MD03G1170500.v1.1
prunus_persica Prupe.4G256400_v2.0.a1
rosa_samantha Rh5AG339400 Rh5BG349300 Rh5CG376200 Rh5DG362200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 1 cut(s) 320
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 3 cut(s) 48, 96, 128
AluI AGCT 3 cut(s) 48, 96, 128
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 48, 205
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 195, 198, 201
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 352
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 3 cut(s) 207, 210, 213
BclI TGATCA 2 cut(s) 133, 139
BcoDI GTCTC 2 cut(s) 48, 205
BisI GCNGC 3 cut(s) 196, 199, 202
BlsI GCNGC 3 cut(s) 197, 200, 203
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 351
BmrI ACTGGG 2 cut(s) 118, 256
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 2 cut(s) 118, 256
BpmI CTGGAG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 2 cut(s) 113, 251
Bse8I GATNNNNATC 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 2 cut(s) 113, 251
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 3 cut(s) 207, 210, 213
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 48, 205
BsmBI CGTCTC 1 cut(s) 48
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 133, 139
BspACI CCGC 1 cut(s) 368
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 81
BspHI TCATGA 2 cut(s) 136, 145
BspLI GGNNCC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 113, 251
BssMI GATC 2 cut(s) 133, 139
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 2 cut(s) 136, 142
BstMAI GTCTC 2 cut(s) 48, 205
BstMBI GATC 2 cut(s) 133, 139
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 207, 210, 213
BsuRI GGCC 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 34, 244
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 2 cut(s) 136, 145
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 25
CviAII CATG 4 cut(s) 137, 146, 394, 405
CviJI RGCY 7 cut(s) 48, 96, 128, 156, 169, 350, 398
CviKI_1 RGCY 7 cut(s) 48, 96, 128, 156, 169, 350, 398
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 89
DpnI GATC 2 cut(s) 135, 141
DpnII GATC 2 cut(s) 133, 139
DraI TTTAAA 2 cut(s) 283, 327
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 4 cut(s) 140, 149, 397, 408
FaiI YATR 6 cut(s) 138, 147, 218, 288, 395, 406
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 4 cut(s) 136, 145, 393, 404
FbaI TGATCA 2 cut(s) 133, 139
Fnu4HI GCNGC 3 cut(s) 196, 199, 202
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 196, 199, 202
GluI GCNGC 3 cut(s) 196, 199, 202
GsuI CTGGAG 1 cut(s) 160
HaeIII GGCC 1 cut(s) 350
Hin1II CATG 4 cut(s) 140, 149, 397, 408
HindIII AAGCTT 1 cut(s) 46
HphI GGTGA 1 cut(s) 352
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 6 cut(s) 53, 88, 104, 131, 137, 146
HpyAV CCTTC 2 cut(s) 146, 321
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 10, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 4 cut(s) 140, 149, 397, 408
Ksp22I TGATCA 2 cut(s) 133, 139
Kzo9I GATC 2 cut(s) 133, 139
LmnI GCTCC 2 cut(s) 125, 133
LpnPI CCDG 5 cut(s) 94, 101, 144, 190, 232
Lsp1109I GCAGC 3 cut(s) 207, 210, 213
LweI GCATC 1 cut(s) 391
MalI GATC 2 cut(s) 135, 141
MboI GATC 2 cut(s) 133, 139
MboII GAAGA 5 cut(s) 71, 90, 235, 383, 389
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 113, 185
MnlI CCTC 6 cut(s) 111, 142, 267, 270, 297, 364
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 4 cut(s) 116, 158, 282, 326
MslI CAYNNNNRTG 1 cut(s) 249
MssI GTTTAAAC 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 201
NdeII GATC 2 cut(s) 133, 139
NlaIII CATG 4 cut(s) 140, 149, 397, 408
NlaIV GGNNCC 1 cut(s) 351
NsiI ATGCAT 1 cut(s) 406
OliI CACNNNNGTG 1 cut(s) 249
PagI TCATGA 2 cut(s) 136, 145
PkrI GCNGC 3 cut(s) 197, 200, 203
PmeI GTTTAAAC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 349
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 130
SaqAI TTAA 4 cut(s) 116, 158, 282, 326
SatI GCNGC 3 cut(s) 196, 199, 202
Sau3AI GATC 2 cut(s) 133, 139
Sau96I GGNCC 1 cut(s) 349
SduI GDGCHC 1 cut(s) 130
SetI ASST 7 cut(s) 50, 98, 130, 264, 281, 308, 342
SfaNI GCATC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 2 cut(s) 113, 185
SsiI CCGC 1 cut(s) 368
SstI GAGCTC 1 cut(s) 130
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 52
TasI AATT 2 cut(s) 113, 185
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 4 cut(s) 116, 158, 282, 326
Tru9I TTAA 4 cut(s) 116, 158, 282, 326
TscAI CASTG 2 cut(s) 34, 251
TseI GCWGC 3 cut(s) 195, 198, 201
TspDTI ATGAA 1 cut(s) 390
TspRI CASTG 2 cut(s) 34, 251
XapI RAATTY 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.