Rh5BG349300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
53465951 .. 53466496
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG349300.1

Sequence Viewer

Length: 363 bp
ATGGATTTGCAAGCAGGATTGGAGTACAGTGGAATGAGAACAAGAAGCTTTCGAGACGAAGATTACAATAATAATAGAAGAGTGTTCCTGAGAAGCTATCCTCTTGACTGGGAATTAAAACAAGGAGCTGCTGATTATGATCATCATGAGGAAGGCTTAAAATCAAAGCCAAACTCCAGCGAGAAATTCAGAAGCAGCAGCAGCAGAAAGAGACCCATAAAGAAGATAATCTTGTCTGTATTTCACTGGGGTGGGGGAAAGGTGGCGTTGTTGAGGAGGTTTAAACATAAGGTTACAATTTATGTCATTTCTTGTATTCCTCTTGGATTTAAGCCCCCCACTGCCCTTATTTCTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.89

Weight (kDa)

10.0

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g28341
malus_domestica MD03G1170500.v1.1
prunus_persica Prupe.4G256400_v2.0.a1
rosa_samantha Rh5AG339400 Rh5BG349300 Rh5CG376200 Rh5DG362200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 26
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 3 cut(s) 48, 96, 128
AluI AGCT 3 cut(s) 48, 96, 128
Alw26I GTCTC 2 cut(s) 48, 205
ApeKI GCWGC 4 cut(s) 128, 195, 198, 201
ApoI RAATTY 1 cut(s) 185
BbvI GCAGC 4 cut(s) 115, 207, 210, 213
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 48, 205
BisI GCNGC 4 cut(s) 129, 196, 199, 202
BlsI GCNGC 4 cut(s) 130, 197, 200, 203
BmrI ACTGGG 2 cut(s) 118, 256
BmuI ACTGGG 2 cut(s) 118, 256
BpmI CTGGAG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 113, 251
Bse8I GATNNNNATC 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 2 cut(s) 113, 251
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 4 cut(s) 115, 207, 210, 213
BsmAI GTCTC 2 cut(s) 48, 205
BsmBI CGTCTC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 113, 251
BssMI GATC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 2 cut(s) 48, 205
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 115, 207, 210, 213
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 3 cut(s) 34, 244, 339
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 1 cut(s) 145
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 146
CviJI RGCY 6 cut(s) 48, 96, 128, 156, 169, 334
CviKI_1 RGCY 6 cut(s) 48, 96, 128, 156, 169, 334
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
DraI TTTAAA 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 1 cut(s) 149
FaiI YATR 5 cut(s) 138, 147, 218, 288, 303
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 129, 196, 199, 202
Fsp4HI GCNGC 4 cut(s) 129, 196, 199, 202
GluI GCNGC 4 cut(s) 129, 196, 199, 202
GsuI CTGGAG 1 cut(s) 160
Hin1II CATG 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 4 cut(s) 53, 88, 104, 146
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 4 cut(s) 94, 101, 190, 232
Lsp1109I GCAGC 4 cut(s) 115, 207, 210, 213
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 3 cut(s) 71, 90, 235
MluCI AATT 4 cut(s) 113, 185, 297, 358
MnlI CCTC 5 cut(s) 111, 142, 267, 270, 330
MseI TTAA 5 cut(s) 116, 158, 282, 330, 361
MslI CAYNNNNRTG 1 cut(s) 249
MssI GTTTAAAC 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 201
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 149
OliI CACNNNNGTG 1 cut(s) 249
PagI TCATGA 1 cut(s) 145
PkrI GCNGC 4 cut(s) 130, 197, 200, 203
PmeI GTTTAAAC 1 cut(s) 283
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 5 cut(s) 116, 158, 282, 330, 361
SatI GCNGC 4 cut(s) 129, 196, 199, 202
Sau3AI GATC 1 cut(s) 139
SetI ASST 6 cut(s) 50, 98, 130, 264, 281, 294
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 4 cut(s) 113, 185, 297, 358
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 52
TasI AATT 4 cut(s) 113, 185, 297, 358
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 5 cut(s) 116, 158, 282, 330, 361
Tru9I TTAA 5 cut(s) 116, 158, 282, 330, 361
TscAI CASTG 3 cut(s) 34, 251, 346
TseI GCWGC 4 cut(s) 128, 195, 198, 201
TspRI CASTG 3 cut(s) 34, 251, 346
XapI RAATTY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.