Rh5CG376200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
48717892 .. 48718371
480 bp
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UTR
Exon/CDS
Intron
Rh5CG376200.1

Sequence Viewer

Length: 360 bp
ATGGATTTGCAAGCAGGATTGGAGTACGGTGGAATGAGAACAAGAAGCTTTCGAGACGAAGATTTCAATAATAGAAGAGTGTTCCTGAGAAGCTATCCTCTTGACTGGGAATTAAAACAAGGAGCTGCTGATCATGATCATCATGAGGAAGGCTTAAAATCAAAGTCAAACTCCAGCAAGAAATTCAGAAGCAGCAGCAGCAGAAAGAGAACCATAAAGAAGATAATCTTGTCTGTGTTTCACTGGGGTGGGGGAAAGGTGGTGTTGTTGAGGAGGTTTAAACATAAGGTTACAATTTATGTCATTTCTTGTATTCCTCTTGGATTTAAGCCCCCCACTGCCCTTATTTCTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.72

Weight (kDa)

10.28

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g28341
malus_domestica MD03G1170500.v1.1
prunus_persica Prupe.4G256400_v2.0.a1
rosa_samantha Rh5AG339400 Rh5BG349300 Rh5CG376200 Rh5DG362200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 246
AluBI AGCT 3 cut(s) 48, 93, 125
AluI AGCT 3 cut(s) 48, 93, 125
Alw26I GTCTC 1 cut(s) 48
ApeKI GCWGC 4 cut(s) 125, 192, 195, 198
ApoI RAATTY 1 cut(s) 182
BbvI GCAGC 4 cut(s) 112, 204, 207, 210
BclI TGATCA 2 cut(s) 130, 136
BcoDI GTCTC 1 cut(s) 48
BisI GCNGC 4 cut(s) 126, 193, 196, 199
BlsI GCNGC 4 cut(s) 127, 194, 197, 200
BmrI ACTGGG 2 cut(s) 115, 253
BmuI ACTGGG 2 cut(s) 115, 253
BpmI CTGGAG 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 110, 248
Bse8I GATNNNNATC 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 135
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 110, 248
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 4 cut(s) 112, 204, 207, 210
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 130, 136
BspCNI CTCAG 1 cut(s) 78
BspHI TCATGA 2 cut(s) 133, 142
BsrI ACTGG 2 cut(s) 110, 248
BssMI GATC 2 cut(s) 130, 136
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 86
BstKTI GATC 2 cut(s) 133, 139
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 2 cut(s) 130, 136
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstV1I GCAGC 4 cut(s) 112, 204, 207, 210
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 241, 336
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 2 cut(s) 133, 142
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 134, 143
CviJI RGCY 5 cut(s) 48, 93, 125, 153, 331
CviKI_1 RGCY 5 cut(s) 48, 93, 125, 153, 331
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 86
DpnI GATC 2 cut(s) 132, 138
DpnII GATC 2 cut(s) 130, 136
DraI TTTAAA 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 2 cut(s) 137, 146
FaiI YATR 5 cut(s) 135, 144, 215, 285, 300
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 2 cut(s) 133, 142
FbaI TGATCA 2 cut(s) 130, 136
Fnu4HI GCNGC 4 cut(s) 126, 193, 196, 199
Fsp4HI GCNGC 4 cut(s) 126, 193, 196, 199
GluI GCNGC 4 cut(s) 126, 193, 196, 199
GsuI CTGGAG 1 cut(s) 157
Hin1II CATG 2 cut(s) 137, 146
HindIII AAGCTT 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 5 cut(s) 53, 85, 101, 134, 143
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 2 cut(s) 137, 146
Ksp22I TGATCA 2 cut(s) 130, 136
Kzo9I GATC 2 cut(s) 130, 136
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 91, 98, 187, 229
Lsp1109I GCAGC 4 cut(s) 112, 204, 207, 210
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 132, 138
MboI GATC 2 cut(s) 130, 136
MboII GAAGA 3 cut(s) 71, 87, 232
MluCI AATT 4 cut(s) 110, 182, 294, 355
MnlI CCTC 5 cut(s) 108, 139, 264, 267, 327
MseI TTAA 5 cut(s) 113, 155, 279, 327, 358
MslI CAYNNNNRTG 1 cut(s) 246
MssI GTTTAAAC 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 2 cut(s) 130, 136
NlaIII CATG 2 cut(s) 137, 146
OliI CACNNNNGTG 1 cut(s) 246
PagI TCATGA 2 cut(s) 133, 142
PkrI GCNGC 4 cut(s) 127, 194, 197, 200
PmeI GTTTAAAC 1 cut(s) 280
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 5 cut(s) 113, 155, 279, 327, 358
SatI GCNGC 4 cut(s) 126, 193, 196, 199
Sau3AI GATC 2 cut(s) 130, 136
SetI ASST 6 cut(s) 50, 95, 127, 261, 278, 291
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 4 cut(s) 110, 182, 294, 355
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 52
TasI AATT 4 cut(s) 110, 182, 294, 355
Tru1I TTAA 5 cut(s) 113, 155, 279, 327, 358
Tru9I TTAA 5 cut(s) 113, 155, 279, 327, 358
TscAI CASTG 2 cut(s) 248, 343
TseI GCWGC 4 cut(s) 125, 192, 195, 198
TspRI CASTG 2 cut(s) 248, 343
XapI RAATTY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.