Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016552

Physical Location & Seq

Genomic Coordinates Forward (+)

26387865 .. 26390200

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1192100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGGTTCTTAGTTACGACCCTAATTTTCATTGTGATTGGGATTATTGCGTCCTTATGTACCAGAATTTGCTGCAACCGAGGACCCTCTGCTAATTTGTTCCATCTAACATTGGTTATTACAGCAACGATCTGTTGTTGGATGATGTGGGCAATTGTATATCTTGCACAAATGAAACCACTCATAGTCCCTATTCTAAATGAAGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP_synt_H

Protein Analysis

71

Amino Acids

7.76

Weight (kDa)

7.63

Isoelectric Point (pI)

16.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_synt_H	PF05493	3 - 67	5.8e-21	ATP synthase subunit H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26710 AT4G26710
fragaria_vesca	FvH4_3g23660
malus_domestica	MD03G1192100.v1.1 MD11G1208300.v1.1
prunus_persica	Prupe.4G225100_v2.0.a1
pyrus_communis	pycom03g14460
rosa_chinensis	RchiOBHm_Chr5g0041721
rosa_multiflora	Rmu_sc0000861.1_g000028
rosa_roxburghii	Rroxscaffold_1G00038790
rosa_samantha	Rh5AG280200 Rh5BG285700 Rh5DG294500
rosa_wichuraiana	Rw5G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	60
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	83
FaiI	YATR	3 cut(s)	58, 160, 185
FaqI	GGGAC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	73
HgaI	GACGC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	75, 167
HpyF3I	CTNAG	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	1 cut(s)	76
Lsp1109I	GCAGC	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MfeI	CAATTG	1 cut(s)	153
MluCI	AATT	4 cut(s)	24, 66, 94, 153
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	74, 97
MunI	CAATTG	1 cut(s)	153
NdeII	GATC	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	83
PspPPI	RGGWCCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	83
SgeI	CNNG	3 cut(s)	75, 92, 176
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	4 cut(s)	24, 66, 94, 153
TasI	AATT	4 cut(s)	24, 66, 94, 153
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	19, 188
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.