Rmu_sc0000861.1_g000028

ATP synthase subunit H

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000861.1
Physical Location & Seq
Reverse (-)
120163 .. 122921
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000861.1_g000028.1.cds

Sequence Viewer

Length: 399 bp
atggaattcgccgaagtcttcaccagtgccagcgacgttgggctggtcttggcgggctctgcaaaagttgccggagatgaggcattccacaaaatcaaaatcaaaatcaaaatcgagcaagatcccccatcaccatttttctgttcttttaatctattttcccacactttctccagaacgaagctgaggcttcctgattgtgtggatcaagatcgaagagaaatccagcagcatggggttcttcgtcacgagcttgatttttgttgtggaccctctactaatttgttccatctaacattggttattacagccacagtctgctgttggatgatgtgggctattgtatatattgcacaaatgaaacctctcatagtccccattctaagtgaaggagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

14.87

Weight (kDa)

5.92

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26710 AT4G26710
fragaria_vesca FvH4_3g23660
malus_domestica MD03G1192100.v1.1 MD11G1208300.v1.1
prunus_persica Prupe.4G225100_v2.0.a1
pyrus_communis pycom03g14460
rosa_chinensis RchiOBHm_Chr5g0041721
rosa_multiflora Rmu_sc0000861.1_g000028
rosa_roxburghii Rroxscaffold_1G00038790
rosa_samantha Rh5AG280200 Rh5BG285700 Rh5DG294500
rosa_wichuraiana Rw5G026400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 116, 213
AcsI RAATTY 1 cut(s) 5
AluBI AGCT 2 cut(s) 184, 253
AluI AGCT 2 cut(s) 184, 253
AlwI GGATC 2 cut(s) 116, 213
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 13, 123
AvaII GGWCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 241
BccI CCATC 2 cut(s) 136, 297
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse1I ACTGG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 210
BseGI GGATG 1 cut(s) 333
BseJI GATNNNNATC 1 cut(s) 210
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 121, 205, 211
BspACI CCGC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 2 cut(s) 116, 213
BsrI ACTGG 1 cut(s) 24
BssMI GATC 3 cut(s) 121, 205, 211
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 31, 55
BstDEI CTNAG 2 cut(s) 185, 383
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 3 cut(s) 124, 208, 214
BstMBI GATC 3 cut(s) 121, 205, 211
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 1 cut(s) 121
BtsCI GGATG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 31, 55
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 1 cut(s) 233
CviJI RGCY 7 cut(s) 43, 57, 184, 190, 253, 311, 338
CviKI_1 RGCY 7 cut(s) 43, 57, 184, 190, 253, 311, 338
DdeI CTNAG 2 cut(s) 185, 383
DpnI GATC 3 cut(s) 123, 207, 213
DpnII GATC 3 cut(s) 121, 205, 211
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 236
FaiI YATR 4 cut(s) 234, 346, 348, 371
FaqI GGGAC 1 cut(s) 359
FatI CATG 1 cut(s) 232
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 1 cut(s) 340
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 157
HapII CCGG 1 cut(s) 72
Hin1II CATG 1 cut(s) 236
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 13, 123
Hpy166II GTNNAC 1 cut(s) 269
Hpy188III TCNNGA 4 cut(s) 174, 194, 209, 248
Hpy8I GTNNAC 1 cut(s) 269
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 62, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
HpyF3I CTNAG 2 cut(s) 185, 383
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 3 cut(s) 121, 205, 211
LpnPI CCDG 7 cut(s) 29, 37, 43, 85, 187, 207, 239
Lsp1109I GCAGC 1 cut(s) 241
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 123, 207, 213
MboI GATC 3 cut(s) 121, 205, 211
MboII GAAGA 3 cut(s) 10, 228, 233
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 5, 280
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 4 cut(s) 73, 180, 283, 375
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NdeII GATC 3 cut(s) 121, 205, 211
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 245
PctI GAATGC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 121
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 230
Sau3AI GATC 3 cut(s) 121, 205, 211
Sau96I GGNCC 1 cut(s) 269
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 39, 186, 255, 367
SinI GGWCC 1 cut(s) 269
Sse9I AATT 2 cut(s) 5, 280
SsiI CCGC 1 cut(s) 53
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 114, 214
TasI AATT 2 cut(s) 5, 280
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.