Rw5G026400

ATP synthase subunit H

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016552
Physical Location & Seq
Reverse (-)
38162851 .. 38164476
1626 bp
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UTR
Exon/CDS
Intron
Rw5G026400.1

Sequence Viewer

Length: 213 bp
ATGGGGTTCTTCGTCACGAGCTTGATTTTCGTTGTGGTTGGGATCATTGCGTCTCTCTGTACCAGAATTTGCTGCAACAAAGGGCCCTCTACTAATTTGTTCCATCTAACATTGGTTATTACAGCCACAGTCTGCTGTTGGATGATGTGGGCTATTGTATATATTGCACAAATGAAACCTCTCATAGTCCCCATTCTAAGTGAAGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP_synt_H

Protein Analysis

70

Amino Acids

7.71

Weight (kDa)

7.63

Isoelectric Point (pI)

20.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_synt_H PF05493 3 - 67 8.8e-21 ATP synthase subunit H
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26710 AT4G26710
fragaria_vesca FvH4_3g23660
malus_domestica MD03G1192100.v1.1 MD11G1208300.v1.1
prunus_persica Prupe.4G225100_v2.0.a1
pyrus_communis pycom03g14460
rosa_chinensis RchiOBHm_Chr5g0041721
rosa_multiflora Rmu_sc0000861.1_g000028
rosa_roxburghii Rroxscaffold_1G00038790
rosa_samantha Rh5AG280200 Rh5BG285700 Rh5DG294500
rosa_wichuraiana Rw5G026400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 66
AfaI GTAC 1 cut(s) 61
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 83
ApaI GGGCCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 83, 84
BaeGI GKGCMC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 87
BauI CACGAG 1 cut(s) 16
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 57
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 83, 84
BmiI GGNNCC 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 45
BseGI GGATG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 85
Bsp120I GGGCCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 42
BspANI GGCC 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 45
BssMI GATC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 147
Cfr13I GGNCC 2 cut(s) 83, 84
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 60
CviJI RGCY 4 cut(s) 21, 85, 125, 152
CviKI_1 RGCY 4 cut(s) 21, 85, 125, 152
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 197
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 87
EcoO109I RGGNCCY 2 cut(s) 83, 84
EcoT38I GRGCYC 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 57
FaiI YATR 3 cut(s) 160, 162, 185
FaqI GGGAC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 73
HaeIII GGCC 1 cut(s) 85
HgaI GACGC 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 75, 167
HpyF3I CTNAG 1 cut(s) 197
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 1 cut(s) 76
Lsp1109I GCAGC 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 66, 94
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 2 cut(s) 97, 189
NdeII GATC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 85
PspOMI GGGCCC 1 cut(s) 83
PspPI GGNCC 2 cut(s) 83, 84
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 2 cut(s) 83, 84
SduI GDGCHC 1 cut(s) 87
SetI ASST 2 cut(s) 23, 181
SgeI CNNG 4 cut(s) 28, 30, 34, 75
Sse9I AATT 2 cut(s) 66, 94
TaaI ACNGT 1 cut(s) 130
TasI AATT 2 cut(s) 66, 94
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 188
XapI RAATTY 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.