Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008209

Physical Location & Seq

Genomic Coordinates Reverse (-)

34640685 .. 34643373

Gene Structure 2689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1259600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGCAGTATGAAGTTCTAGAGCAGATTGGGAAGGGTTCTTTTGGTTCTGCTCTTCTCGTGAGGCATAAGCACGAAAAGAAGAAGTATGTCCTAAAGAAGATCCGCCTTGCTCGTCAAACTGATAGAAGCCGGAGATCTGCCCACCAGGAGATGGAGCTTATTTCCACGGTTCATAATCCATTTATTGTGGAATACAAAGATTCCTGGGTCGAAAGGGGTTGCTTTGTGTGCATTGTTATTGGGTATTGTGAAGGAGGAGACATGGCAGAAGCCATAAAAAGGGCCCGTGGTGTTCATTTCTCTGAAGAGAAACTCTGCCAATGGTTAGTTCAACTGTTGATGGCACTTGACTACTTGCATGCAAACCATATTCTTCACCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCAAGACATCCGTCTGGGTGACTTTGGTCTCGCTAAAATGTTAACTTCAGATGATCTAGCTTCCTCTGTTGTCGGAACTCCGAGTCATATGTGCCCTGAGCTTCTTGCTGACATACCTTATGGTTCTAAGTCAGATATTTGGTCTTTAGGATGCTGTATATATGAAATGGCTGCTTTCAGGCCTGCATTTAAAGCCTTTGATATACAATCTCTGATTAACAAAATAAACAAGTCAATAGTGGCTCCACTTCCGACATTGTACTCTGGTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

232

Amino Acids

26.14

Weight (kDa)

8.08

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 215	4.1e-56	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 218	7.1e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63280 AT3G63280 AT3G63280 AT3G63280
fragaria_vesca	FvH4_2g23090
malus_domestica	MD03G1259600.v1.1 MD11G1280100.v1.1
prunus_persica	Prupe.8G236000_v2.0.a1 Prupe.8G236000_v2.0.a1
pyrus_communis	pycom03g20750 pycom11g24780
rosa_chinensis	RchiOBHm_Chr6g0290241 RchiOBHm_Chr7g0178391
rosa_laevigata	RLG00000012231
rosa_multiflora	Rmu_sc0002902.1_g000010
rosa_rugosa	Rorug06G0211200
rosa_samantha	Rh6AG321500 Rh6BG328600 Rh6CG334600 Rh6CG334700 Rh6DG321600
rosa_wichuraiana	Rw4G037780 Rw6G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	327, 450
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	2 cut(s)	154, 282
AgsI	TTSAA	2 cut(s)	335, 399
AjnI	CCWGG	2 cut(s)	147, 206
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	3 cut(s)	160, 479, 520
AluI	AGCT	3 cut(s)	160, 479, 520
Alw26I	GTCTC	2 cut(s)	255, 452
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	2 cut(s)	285, 599
ApaI	GGGCCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	285, 286
AsuHPI	GGTGA	2 cut(s)	371, 449
BaeGI	GKGCMC	2 cut(s)	289, 515
BanII	GRGCYC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	2 cut(s)	148, 337
BciT130I	CCWGG	2 cut(s)	149, 208
BcoDI	GTCTC	2 cut(s)	255, 452
BfaI	CTAG	2 cut(s)	20, 476
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	592
Bme1390I	CCNGG	2 cut(s)	149, 208
BmgT120I	GGNCC	2 cut(s)	285, 286
BmiI	GGNNCC	2 cut(s)	287, 663
BmrFI	CCNGG	2 cut(s)	149, 208
BmsI	GCATC	1 cut(s)	560
BoxI	GACNNNNGTC	2 cut(s)	429, 444
Bpu10I	CCTNAGC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	168, 207, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 282
BseBI	CCWGG	2 cut(s)	149, 208
BseDI	CCNNGG	3 cut(s)	168, 207, 289
BseGI	GGATG	2 cut(s)	426, 575
BseLI	CCNNNNNNNGG	2 cut(s)	154, 282
BseMII	CTCAG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	2 cut(s)	289, 515
BseXI	GCAGC	1 cut(s)	577
BshFI	GGCC	2 cut(s)	287, 601
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	154, 282
BsmAI	GTCTC	2 cut(s)	255, 452
BsnI	GGCC	2 cut(s)	287, 601
Bso31I	GGTCTC	1 cut(s)	452
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	289, 515
Bsp143I	GATC	4 cut(s)	102, 137, 418, 472
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	287, 601
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	287, 663
BspPI	GGATC	1 cut(s)	97
BspQI	GCTCTTC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	168, 207, 289
BssMI	GATC	4 cut(s)	102, 137, 418, 472
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	149, 208
Bst4CI	ACNGT	3 cut(s)	172, 339, 383
Bst6I	CTCTTC	2 cut(s)	60, 303
BstC8I	GCNNGC	2 cut(s)	363, 603
BstDEI	CTNAG	2 cut(s)	516, 546
BstDSI	CCRYGG	2 cut(s)	168, 289
BstF5I	GGATG	2 cut(s)	426, 575
BstKTI	GATC	4 cut(s)	105, 140, 421, 475
BstMAI	GTCTC	2 cut(s)	255, 452
BstMBI	GATC	4 cut(s)	102, 137, 418, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 611
BstNI	CCWGG	2 cut(s)	149, 208
BstNSI	RCATGY	1 cut(s)	365
BstPAI	GACNNNNGTC	2 cut(s)	429, 444
BstSCI	CCNGG	2 cut(s)	147, 206
BstSLI	GKGCMC	2 cut(s)	289, 515
BstV1I	GCAGC	1 cut(s)	577
BstX2I	RGATCY	2 cut(s)	102, 137
BstYI	RGATCY	2 cut(s)	102, 137
BsuRI	GGCC	2 cut(s)	287, 601
BtgI	CCRYGG	2 cut(s)	168, 289
BtsCI	GGATG	2 cut(s)	426, 575
Cac8I	GCNNGC	2 cut(s)	363, 603
Cfr13I	GGNCC	2 cut(s)	285, 286
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	2 cut(s)	265, 362
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	2 cut(s)	516, 546
DpnI	GATC	4 cut(s)	104, 139, 420, 474
DpnII	GATC	4 cut(s)	102, 137, 418, 472
DraI	TTTAAA	1 cut(s)	610
Eam1104I	CTCTTC	2 cut(s)	60, 303
EarI	CTCTTC	2 cut(s)	60, 303
EciI	GGCGGA	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	327, 450
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	147, 206
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	2 cut(s)	268, 365
FatI	CATG	2 cut(s)	264, 361
FauNDI	CATATG	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	591
FokI	GGATG	2 cut(s)	413, 582
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	591
FspBI	CTAG	2 cut(s)	20, 476
GluI	GCNGC	1 cut(s)	591
HaeIII	GGCC	2 cut(s)	287, 601
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	2 cut(s)	268, 365
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	203, 502
HpaI	GTTAAC	1 cut(s)	462
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	2 cut(s)	371, 449
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188I	TCNGA	7 cut(s)	307, 469, 494, 501, 553, 633, 672
Hpy188III	TCNNGA	3 cut(s)	20, 61, 422
Hpy8I	GTNNAC	1 cut(s)	462
HpyAV	CCTTC	2 cut(s)	28, 248
HpyCH4III	ACNGT	3 cut(s)	172, 339, 383
HpyCH4V	TGCA	5 cut(s)	234, 361, 365, 605, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 611
HpyF3I	CTNAG	2 cut(s)	516, 546
Hsp92II	CATG	2 cut(s)	268, 365
KspAI	GTTAAC	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	102, 137, 418, 472
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	3 cut(s)	4, 157, 667
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	2 cut(s)	20, 476
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	4 cut(s)	104, 139, 420, 474
MboI	GATC	4 cut(s)	102, 137, 418, 472
MboII	GAAGA	5 cut(s)	47, 94, 112, 320, 368
MflI	RGATCY	2 cut(s)	102, 137
MhlI	GDGCHC	2 cut(s)	289, 515
MlyI	GAGTC	1 cut(s)	511
MmeI	TCCRAC	2 cut(s)	472, 695
MnlI	CCTC	3 cut(s)	57, 251, 493
MseI	TTAA	3 cut(s)	461, 609, 636
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	149, 208
MvaI	CCWGG	2 cut(s)	149, 208
MwoI	GCNNNNNNNGC	2 cut(s)	231, 611
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	4 cut(s)	102, 137, 418, 472
NlaIII	CATG	2 cut(s)	268, 365
NlaIV	GGNNCC	2 cut(s)	287, 663
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	592
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
PshAI	GACNNNNGTC	2 cut(s)	429, 444
Psp6I	CCWGG	2 cut(s)	147, 206
PspGI	CCWGG	2 cut(s)	147, 206
PspN4I	GGNNCC	2 cut(s)	287, 663
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	285, 286
PsuI	RGATCY	2 cut(s)	102, 137
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	461, 609, 636
SatI	GCNGC	1 cut(s)	591
Sau3AI	GATC	4 cut(s)	102, 137, 418, 472
Sau96I	GGNCC	2 cut(s)	285, 286
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	149, 208
SduI	GDGCHC	2 cut(s)	289, 515
SetI	ASST	4 cut(s)	162, 481, 522, 538
SfaNI	GCATC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	384
SphI	GCATGC	1 cut(s)	365
SseBI	AGGCCT	1 cut(s)	601
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	20, 476
StuI	AGGCCT	1 cut(s)	601
StyD4I	CCNGG	2 cut(s)	147, 206
TaaI	ACNGT	3 cut(s)	172, 339, 383
TaqI	TCGA	1 cut(s)	213
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	3 cut(s)	461, 609, 636
Tru9I	TTAA	3 cut(s)	461, 609, 636
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	4 cut(s)	27, 164, 287, 597
TspGWI	ACGGA	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	19
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	2 cut(s)	20, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.