Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008209

Physical Location & Seq

Genomic Coordinates Forward (+)

64304247 .. 64304635

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAGTCTAGGATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTGGGAGCCGCGATTTTGGTTCATCACAAGGCTGAGAAGAAGAAGTATGTGTTGAAGAAGATCCGGCTTGCGAGGCAGACGGAGCGGTGCTGGAGATCTGCTCATCAAGAGATAGTTTTCAAGTTCAATACTTTGATTTCCGGTTCTGTTGTCATAGGATATAGTTTTACTGCTATTTGGTGTAGATTTAGTTATGTAGTTTTGTTGGTTGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

90

Amino Acids

10.46

Weight (kDa)

9.64

Isoelectric Point (pI)

23.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63280 AT3G63280 AT3G63280 AT3G63280
fragaria_vesca	FvH4_2g23090
malus_domestica	MD03G1259600.v1.1 MD11G1280100.v1.1
prunus_persica	Prupe.8G236000_v2.0.a1 Prupe.8G236000_v2.0.a1
pyrus_communis	pycom03g20750 pycom11g24780
rosa_chinensis	RchiOBHm_Chr6g0290241 RchiOBHm_Chr7g0178391
rosa_laevigata	RLG00000012231
rosa_multiflora	Rmu_sc0002902.1_g000010
rosa_rugosa	Rorug06G0211200
rosa_samantha	Rh6AG321500 Rh6BG328600 Rh6CG334600 Rh6CG334700 Rh6DG321600
rosa_wichuraiana	Rw4G037780 Rw6G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 139
AclWI	GGATC	2 cut(s)	24, 109
AcoI	YGGCCR	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	109, 175, 181
AluBI	AGCT	2 cut(s)	28, 53
AluI	AGCT	2 cut(s)	28, 53
AlwI	GGATC	2 cut(s)	24, 109
AoxI	GGCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	47
BccI	CCATC	2 cut(s)	7, 25
BcnI	CCSGG	1 cut(s)	47
BfaI	CTAG	1 cut(s)	9
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	78
BseX3I	CGGCCG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	46, 118, 195
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	16, 39, 114, 149
BspACI	CCGC	2 cut(s)	63, 139
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	24, 109
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	4 cut(s)	16, 39, 114, 149
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	4 cut(s)	19, 42, 117, 152
BstMBI	GATC	4 cut(s)	16, 39, 114, 149
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 59, 127, 136
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	114, 149
BstYI	RGATCY	2 cut(s)	114, 149
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	123
CviJI	RGCY	6 cut(s)	28, 45, 53, 62, 86, 121
CviKI_1	RGCY	6 cut(s)	28, 45, 53, 62, 86, 121
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	4 cut(s)	18, 41, 116, 151
DpnII	GATC	4 cut(s)	16, 39, 114, 149
EaeI	YGGCCR	1 cut(s)	43
EagI	CGGCCG	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	43
FaiI	YATR	5 cut(s)	24, 102, 209, 216, 249
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	3 cut(s)	46, 118, 195
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	46, 118, 195
Hpy188III	TCNNGA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 59, 127, 136
HpyF3I	CTNAG	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	16, 39, 114, 149
LmnI	GCTCC	4 cut(s)	34, 50, 59, 136
LpnPI	CCDG	4 cut(s)	59, 130, 131, 208
MaeI	CTAG	1 cut(s)	9
MalI	GATC	4 cut(s)	18, 41, 116, 151
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	4 cut(s)	16, 39, 114, 149
MboII	GAAGA	4 cut(s)	103, 106, 121, 124
MflI	RGATCY	2 cut(s)	114, 149
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	1 cut(s)	120
MspI	CCGG	3 cut(s)	46, 118, 195
MspR9I	CCNGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	34, 59, 127, 136
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	16, 39, 114, 149
NlaIV	GGNNCC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	114, 149
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	16, 39, 114, 149
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	2 cut(s)	30, 55
SsiI	CCGC	2 cut(s)	63, 139
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	45
TauI	GCSGC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	149
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.