Rh6CG334700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008209
Physical Location & Seq
Reverse (-)
52308938 .. 52309246
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG334700.1

Sequence Viewer

Length: 216 bp
ATGGACCAGTATGAAATTCTGGAGCAGATTGGGAAAGGTTCTTTTGGTTCTGCTCTTCTCGTGCGGCATAAGCACGAAAAGAAGAAGTATGTGCTGAAGAAGATCCGTCTTGCTCGTCAAACTGATAGAACCCGCAGATCTGCTCACCAGGAGGTTGGTGTTGTAACATTTGGTGTAGAACTCAATTCCATGAGCACATGTGATAGTAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

71

Amino Acids

8.15

Weight (kDa)

9.51

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 55 1.9e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 133
AclWI GGATC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 197
AjnI CCWGG 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 197
AlwI GGATC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 149
BglII AGATCT 1 cut(s) 137
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 7
BseBI CCWGG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 102, 137
BspACI CCGC 2 cut(s) 64, 133
BspPI GGATC 1 cut(s) 97
BspQI GCTCTTC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 7
BssMI GATC 2 cut(s) 102, 137
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 60
BstKTI GATC 2 cut(s) 105, 140
BstMBI GATC 2 cut(s) 102, 137
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 147
BstX2I RGATCY 2 cut(s) 102, 137
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 2 cut(s) 102, 137
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 190, 198
DpnI GATC 2 cut(s) 104, 139
DpnII GATC 2 cut(s) 102, 137
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 193, 201
FaiI YATR 5 cut(s) 12, 69, 90, 191, 199
FatI CATG 2 cut(s) 189, 197
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 41
Hin1II CATG 2 cut(s) 193, 201
HphI GGTGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
Hsp92II CATG 2 cut(s) 193, 201
Kzo9I GATC 2 cut(s) 102, 137
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 5, 20, 134, 161
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 104, 139
MboI GATC 2 cut(s) 102, 137
MboII GAAGA 4 cut(s) 47, 94, 109, 112
MflI RGATCY 2 cut(s) 102, 137
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 2 cut(s) 15, 184
MnlI CCTC 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 2 cut(s) 102, 137
NlaIII CATG 2 cut(s) 193, 201
NspI RCATGY 1 cut(s) 201
PciI ACATGT 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 66
PscI ACATGT 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 102, 137
SapI GCTCTTC 1 cut(s) 60
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 102, 137
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 197
SetI ASST 2 cut(s) 40, 156
SinI GGWCC 1 cut(s) 4
Sse9I AATT 2 cut(s) 15, 184
SsiI CCGC 2 cut(s) 64, 133
StyD4I CCNGG 1 cut(s) 147
TasI AATT 2 cut(s) 15, 184
TauI GCSGC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.