RchiOBHm_Chr7g0178391

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008209
Physical Location & Seq
Forward (+)
1068096 .. 1068997
902 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15897

Sequence Viewer

Length: 282 bp
ATGAAGTCGAAGATGGAGGATTATGAAGTCATAGAGCAGATTGGGAGAGGGGCTTTTGGAGCCGCTTTTCTTGTTCTTCACAAGGGACAGAGGAAGAAGTATGTGTTAAAGAAGATTCGTTTATCTAAGCAAACGGAGAAGTTCAAACGCACAGCTCACCAAGAGGTTGCTTTCTCCAAAAATGTTGAACTGTGTGTCGTCTCTTATTTTTCTTTTATATTGTTCCATTTTTTGTACAAGGGTCTGGTCCCTGTTAAAGGGTTAGGCTTTTTTTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

93

Amino Acids

10.87

Weight (kDa)

9.96

Isoelectric Point (pI)

28.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 8 - 64 1.9e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 63
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 145, 188
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 247
BccI CCATC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 205
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 61, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 99, 233
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 205
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 99, 233
Bsp1407I TGTACA 1 cut(s) 234
BspACI CCGC 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 61, 249
BsrGI TGTACA 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 192
BstAUI TGTACA 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 126
BstENI CCTNNNNNAGG 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 4 cut(s) 53, 62, 155, 267
CviKI_1 RGCY 4 cut(s) 53, 62, 155, 267
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 205
FaiI YATR 4 cut(s) 24, 32, 102, 218
FaqI GGGAC 2 cut(s) 99, 233
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 115
HphI GGTGA 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 126
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 230, 264
MboII GAAGA 4 cut(s) 22, 68, 106, 124
MnlI CCTC 4 cut(s) 10, 41, 84, 157
MseI TTAA 2 cut(s) 107, 255
MwoI GCNNNNNNNGC 1 cut(s) 59
NlaIV GGNNCC 2 cut(s) 61, 249
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 61, 249
PspPI GGNCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 107, 255
SatI GCNGC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 247
SetI ASST 2 cut(s) 157, 168
SgeI CNNG 6 cut(s) 83, 94, 173, 250, 257, 263
SinI GGWCC 1 cut(s) 247
SsiI CCGC 1 cut(s) 63
TaaI ACNGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 8
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 107, 255
Tru9I TTAA 2 cut(s) 107, 255
TspDTI ATGAA 2 cut(s) 17, 39
TspGWI ACGGA 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.