MD04G1081700.v1.1

Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015162
Physical Location & Seq
Reverse (-)
11286793 .. 11289486
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1081700.v1.1.491

Sequence Viewer

Length: 1569 bp
ATGATGTCATCGCCCGCATTAGCTGCTTCATCAAGTCTTTTACCATTCAATTGTAGGGCAAAGCACTGTGCTGGGCTGTTTCCTAGTTTCTTGAGAAAATGTGGGACCAAGATAACATTATCTGCCAGTTCTCAACAGAAAGGATTTCGATTTGCGATTGCTTCCAGTGCGCCTGGGTCGAATGGTAGTGTTAAGGATTTATCTGAAGCTGAAACTGCACCTCAATTGTATTCTTGGCCGGATAAGAAGAAACCAAGAATATGTATACTAGGTGGTGGATTCGGAGGTCTATATACTGCATTACGACTAGAATCCTTGGAGTGGCCTGATGACAAGAAACCTCAGGTCCTCCTTGTTGACCAGTCCGAACGCTTTGTTTTCAAGCCAATGCTGTATGAGCTTCTTACAGGAGAAGTAGATGCATGGGAGATAGCTCCTCGTTTCTTAGACTTACTGGCAAATACAAGTGTGCCGTTCTATCAAGATAAGGCCAAACTATTATATCCCTCTGACCATTATGGACCTACACAATCCAGCCTTGGGGGAACTGTGCTACTTGAGAGTGGACTCCTTGTTGAATACGACTGGCTGGTTCTTGCTTTGGGAGCTGAATCAAAGCTTGATGTTGTACCAGGAGCAGTAGAATTTGCATTGCCATTCTCCACCCTGGAGGATGCTCATAAGGTTGATCGTAAGTTAAGAACATTGGAGAGGAAGAACTTCCGTAAGGAATCTTTGATTCGTGTGGTTGTTGTTGGTTGTGGTTACTCTGGAGTTGAGTTAGCTGCCACTGTATCAGAGAGACTGCAGGATAGAGGTATAGTACAAGCAATTAATGTGGAAACCACAATCTGCCCGAATGCCCCGCCTGGCAATAGGGAAGCTGCAATTAAAGTACTCACATCGAGAAAAGTTGAACTTCTGTTGGGTTATGTTGTCCGCTGTATTCGTAAAGCTGTTGATGCAGAACATGATTCCGAGAAATATATATTGGAACTTCAACCTGCTCAAAGGGGATCACAAAGTCAAACTGTGGAAGCAGATCTTGTATTATGGACTGTTGGGAACAAATCTCTTCTTCCTAAGCTGGAACCCGAGGACAGGCCCCATGAGCTTCCCCTAAATGCTCGTGGACAAGCAGAAACAGATGAAAATCTTCGCGTTAAAGGCCATCCACGCATATTTGCAGTTGGTGACTCTTGTGCTCTAAGGGAATCAAATGGAAGGCTTCTTCCTGCCACTGCACAGGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCTGCAATCAATGACCGCCCTCTTTTGCCGTTTAAGTTTCAGAATTTAGGTGAAATGATAACTCTGGGAAGAAATGATGCTGCTATTTCTCCAAGTTTCATTGAGGGGCTAACTTTAGAAGGTCCTATCGGCCATACGGCAAGGAAATTAGCTTACTTGATTAGATTACCAACGGATGAGCATAGGCTTAAAGTAGGAATCAGCTGGCTCACAAAATCTGCTATAGATTCGGTTGCATCTCTGCAGAGCACCCTGACTAAGGTCCTTTCAAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3 Pyr_redox_2

Protein Analysis

523

Amino Acids

57.23

Weight (kDa)

7.57

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 86 - 422 2.6e-34 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08740
fragaria_vesca FvH4_5g00410
malus_domestica MD04G1081700.v1.1
prunus_persica Prupe.5G076700_v2.0.a1 Prupe.5G076700_v2.0.a1
pyrus_communis pycom04g07350
rosa_chinensis RchiOBHm_Chr7g0202111
rosa_laevigata RLG00000003625
rosa_multiflora Rmu_ssc0000228.1_g000001
rosa_roxburghii Rroxscaffold_3G00254850
rosa_rugosa Rorug07G0068000
rosa_samantha Rh7AG195500 Rh7BG196800 Rh7CG206600 Rh7DG202100
rosa_wichuraiana Rw7G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1012
AccI GTMKAC 1 cut(s) 265
AccII CGCG 1 cut(s) 1161
AciI CCGC 4 cut(s) 15, 866, 940, 1306
AclWI GGATC 1 cut(s) 1024
AcoI YGGCCR 2 cut(s) 236, 1420
AcsI RAATTY 2 cut(s) 644, 1333
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 3 cut(s) 630, 825, 897
AfiI CCNNNNNNNGG 4 cut(s) 321, 540, 1101, 1549
AgsI TTSAA 6 cut(s) 49, 382, 578, 917, 1001, 1560
AjnI CCWGG 4 cut(s) 172, 631, 666, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
Alw21I GWGCWC 2 cut(s) 1207, 1541
Alw26I GTCTC 1 cut(s) 796
AlwI GGATC 1 cut(s) 1024
Ama87I CYCGRG 1 cut(s) 1094
AoxI GGCC 6 cut(s) 236, 323, 489, 1103, 1168, 1420
ApeKI GCWGC 5 cut(s) 23, 785, 884, 1292, 1370
ApoI RAATTY 2 cut(s) 644, 1333
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 2 cut(s) 719, 1155
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 6 cut(s) 105, 346, 521, 1104, 1412, 1552
AsuHPI GGTGA 2 cut(s) 1205, 1352
AvaI CYCGRG 1 cut(s) 1094
AvaII GGWCC 5 cut(s) 105, 346, 521, 1412, 1552
AxyI CCTNAGG 1 cut(s) 342
BauI CACGAG 1 cut(s) 1128
Bbv12I GWGCWC 2 cut(s) 1207, 1541
BbvI GCAGC 5 cut(s) 10, 772, 871, 1279, 1357
BccI CCATC 1 cut(s) 1179
BceAI ACGGC 3 cut(s) 457, 1303, 1443
BciT130I CCWGG 4 cut(s) 174, 633, 668, 870
BcoDI GTCTC 1 cut(s) 796
BfaI CTAG 3 cut(s) 84, 269, 308
BfmI CTRYAG 3 cut(s) 806, 1512, 1532
BfuAI ACCTGC 1 cut(s) 1012
BglII AGATCT 1 cut(s) 1042
BisI GCNGC 5 cut(s) 24, 786, 885, 1293, 1371
BlsI GCNGC 5 cut(s) 25, 787, 886, 1294, 1372
BmcAI AGTACT 1 cut(s) 897
Bme1390I CCNGG 4 cut(s) 174, 633, 668, 870
Bme18I GGWCC 5 cut(s) 105, 346, 521, 1412, 1552
BmeT110I CYCGRG 1 cut(s) 1094
BmgT120I GGNCC 6 cut(s) 105, 346, 521, 1104, 1412, 1552
BmiI GGNNCC 3 cut(s) 106, 1092, 1106
BmrFI CCNGG 4 cut(s) 174, 633, 668, 870
BmsI GCATC 5 cut(s) 409, 664, 952, 1357, 1535
BoxI GACNNNNGTC 1 cut(s) 1550
BpmI CTGGAG 2 cut(s) 689, 792
Bpu10I CCTNAGC 1 cut(s) 1083
BpuEI CTTGAG 2 cut(s) 112, 578
BsaBI GATNNNNATC 1 cut(s) 1152
BsaJI CCNNGG 5 cut(s) 173, 315, 538, 666, 1095
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 540, 1101, 1549
Bse1I ACTGG 5 cut(s) 126, 165, 361, 459, 590
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 650
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 4 cut(s) 174, 633, 668, 870
BseDI CCNNGG 5 cut(s) 173, 315, 538, 666, 1095
BseGI GGATG 3 cut(s) 679, 1171, 1471
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 4 cut(s) 321, 540, 1101, 1549
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 5 cut(s) 126, 165, 361, 459, 590
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 5 cut(s) 10, 772, 871, 1279, 1357
BseYI CCCAGC 1 cut(s) 71
BsgI GTGCAG 2 cut(s) 201, 1227
Bsh1236I CGCG 1 cut(s) 1161
BshFI GGCC 6 cut(s) 238, 325, 491, 1105, 1170, 1422
BsiHKAI GWGCWC 2 cut(s) 1207, 1541
BsiHKCI CYCGRG 1 cut(s) 1094
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 4 cut(s) 321, 540, 1101, 1549
BsmAI GTCTC 1 cut(s) 796
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 6 cut(s) 238, 325, 491, 1105, 1170, 1422
BsoBI CYCGRG 1 cut(s) 1094
Bsp1286I GDGCHC 2 cut(s) 1207, 1541
Bsp143I GATC 3 cut(s) 688, 1016, 1042
BspACI CCGC 4 cut(s) 15, 866, 940, 1306
BspANI GGCC 6 cut(s) 238, 325, 491, 1105, 1170, 1422
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 1161
BspLI GGNNCC 3 cut(s) 106, 1092, 1106
BspMAI CTGCAG 2 cut(s) 810, 1536
BspMI ACCTGC 1 cut(s) 1012
BspPI GGATC 1 cut(s) 1024
BsrDI GCAATG 1 cut(s) 650
BsrI ACTGG 5 cut(s) 126, 165, 361, 459, 590
BssECI CCNNGG 5 cut(s) 173, 315, 538, 666, 1095
BssMI GATC 3 cut(s) 688, 1016, 1042
BssNAI GTATAC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 1128
BssT1I CCWWGG 2 cut(s) 315, 538
Bst1107I GTATAC 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 1128
Bst2UI CCWGG 4 cut(s) 174, 633, 668, 870
Bst4CI ACNGT 5 cut(s) 68, 550, 793, 1033, 1060
Bst6I CTCTTC 1 cut(s) 1080
BstAPI GCANNNNNTGC 3 cut(s) 23, 1250, 1271
BstC8I GCNNGC 3 cut(s) 15, 1263, 1496
BstDEI CTNAG 5 cut(s) 342, 445, 1083, 1208, 1548
BstENI CCTNNNNNAGG 1 cut(s) 1547
BstF5I GGATG 3 cut(s) 679, 1171, 1471
BstFNI CGCG 1 cut(s) 1161
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 3 cut(s) 691, 1019, 1045
BstMAI GTCTC 1 cut(s) 796
BstMBI GATC 3 cut(s) 688, 1016, 1042
BstNI CCWGG 4 cut(s) 174, 633, 668, 870
BstPAI GACNNNNGTC 1 cut(s) 1550
BstSCI CCNGG 4 cut(s) 172, 631, 666, 868
BstSFI CTRYAG 3 cut(s) 806, 1512, 1532
BstUI CGCG 1 cut(s) 1161
BstV1I GCAGC 5 cut(s) 10, 772, 871, 1279, 1357
BstX2I RGATCY 1 cut(s) 1042
BstYI RGATCY 1 cut(s) 1042
BstZ17I GTATAC 1 cut(s) 266
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 6 cut(s) 238, 325, 491, 1105, 1170, 1422
BtsCI GGATG 3 cut(s) 679, 1171, 1471
BtsI GCAGTG 1 cut(s) 1239
BtsIMutI CAGTG 4 cut(s) 64, 172, 789, 1239
BveI ACCTGC 1 cut(s) 1012
Cac8I GCNNGC 3 cut(s) 15, 1263, 1496
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 6 cut(s) 105, 346, 521, 1104, 1412, 1552
Csp6I GTAC 3 cut(s) 629, 824, 896
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviAII CATG 3 cut(s) 423, 971, 1109
CviQI GTAC 3 cut(s) 629, 824, 896
DdeI CTNAG 5 cut(s) 342, 445, 1083, 1208, 1548
DpnI GATC 3 cut(s) 690, 1018, 1044
DpnII GATC 3 cut(s) 688, 1016, 1042
EaeI YGGCCR 2 cut(s) 236, 1420
Eam1104I CTCTTC 1 cut(s) 1080
EarI CTCTTC 1 cut(s) 1080
Eco130I CCWWGG 2 cut(s) 315, 538
Eco47I GGWCC 5 cut(s) 105, 346, 521, 1412, 1552
Eco57I CTGAAG 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 1094
EcoNI CCTNNNNNAGG 1 cut(s) 1547
EcoO109I RGGNCCY 4 cut(s) 346, 1104, 1412, 1552
EcoRII CCWGG 4 cut(s) 172, 631, 666, 868
EcoT14I CCWWGG 2 cut(s) 315, 538
EcoT22I ATGCAT 1 cut(s) 424
ErhI CCWWGG 2 cut(s) 315, 538
FaeI CATG 3 cut(s) 426, 974, 1112
FalI AAGNNNNNCTT 4 cut(s) 903, 935, 1029, 1061
FaqI GGGAC 1 cut(s) 118
FatI CATG 3 cut(s) 422, 970, 1108
FauI CCCGC 2 cut(s) 22, 873
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 5 cut(s) 24, 786, 885, 1293, 1371
FokI GGATG 3 cut(s) 686, 1158, 1478
Fsp4HI GCNGC 5 cut(s) 24, 786, 885, 1293, 1371
FspBI CTAG 3 cut(s) 84, 269, 308
GlaI GCGC 1 cut(s) 171
GluI GCNGC 5 cut(s) 24, 786, 885, 1293, 1371
GsaI CCCAGC 1 cut(s) 75
GsuI CTGGAG 2 cut(s) 689, 792
HaeIII GGCC 6 cut(s) 238, 325, 491, 1105, 1170, 1422
HapII CCGG 1 cut(s) 239
HhaI GCGC 1 cut(s) 172
Hin1II CATG 3 cut(s) 426, 974, 1112
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 617
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 1205, 1352
Hpy166II GTNNAC 4 cut(s) 266, 358, 566, 1133
Hpy188I TCNGA 7 cut(s) 205, 284, 367, 511, 799, 979, 1332
Hpy188III TCNNGA 4 cut(s) 91, 482, 771, 906
Hpy8I GTNNAC 4 cut(s) 266, 358, 566, 1133
HpyAV CCTTC 2 cut(s) 1218, 1403
HpyCH4III ACNGT 5 cut(s) 68, 550, 793, 1033, 1060
HpyF3I CTNAG 5 cut(s) 342, 445, 1083, 1208, 1548
Hsp92II CATG 3 cut(s) 426, 974, 1112
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 3 cut(s) 688, 1016, 1042
LmnI GCTCC 3 cut(s) 439, 605, 635
Lsp1109I GCAGC 5 cut(s) 10, 772, 871, 1279, 1357
LweI GCATC 5 cut(s) 409, 664, 952, 1357, 1535
MaeI CTAG 3 cut(s) 84, 269, 308
MaeIII GTNAC 2 cut(s) 764, 1193
MalI GATC 3 cut(s) 690, 1018, 1044
MboI GATC 3 cut(s) 688, 1016, 1042
MboII GAAGA 7 cut(s) 259, 727, 1067, 1070, 1148, 1223, 1371
MfeI CAATTG 2 cut(s) 49, 224
MflI RGATCY 1 cut(s) 1042
MhlI GDGCHC 2 cut(s) 1207, 1541
MluCI AATT 7 cut(s) 49, 224, 644, 831, 888, 1333, 1436
MlyI GAGTC 2 cut(s) 561, 1190
MmeI TCCRAC 1 cut(s) 1259
Mph1103I ATGCAT 1 cut(s) 424
MroXI GAANNNNTTC 2 cut(s) 719, 1155
MseI TTAA 7 cut(s) 192, 698, 834, 891, 1164, 1323, 1479
MspA1I CMGCKG 2 cut(s) 942, 1494
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 4 cut(s) 174, 633, 668, 870
MunI CAATTG 2 cut(s) 49, 224
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 4 cut(s) 174, 633, 668, 870
MvnI CGCG 1 cut(s) 1161
NdeII GATC 3 cut(s) 688, 1016, 1042
NlaIII CATG 3 cut(s) 426, 974, 1112
NlaIV GGNNCC 3 cut(s) 106, 1092, 1106
NmuCI GTSAC 1 cut(s) 1193
NsiI ATGCAT 1 cut(s) 424
PctI GAATGC 1 cut(s) 865
PdmI GAANNNNTTC 2 cut(s) 719, 1155
PkrI GCNGC 5 cut(s) 25, 787, 886, 1294, 1372
PleI GAGTC 2 cut(s) 561, 1190
PpsI GAGTC 2 cut(s) 561, 1190
PpuMI RGGWCCY 3 cut(s) 346, 1412, 1552
PshAI GACNNNNGTC 1 cut(s) 1550
PshBI ATTAAT 1 cut(s) 834
Psp5II RGGWCCY 3 cut(s) 346, 1412, 1552
Psp6I CCWGG 4 cut(s) 172, 631, 666, 868
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 4 cut(s) 172, 631, 666, 868
PspN4I GGNNCC 3 cut(s) 106, 1092, 1106
PspPI GGNCC 6 cut(s) 105, 346, 521, 1104, 1412, 1552
PspPPI RGGWCCY 3 cut(s) 346, 1412, 1552
PstI CTGCAG 2 cut(s) 810, 1536
PsuI RGATCY 1 cut(s) 1042
PvuII CAGCTG 1 cut(s) 1494
RsaI GTAC 3 cut(s) 630, 825, 897
RsaNI GTAC 3 cut(s) 629, 824, 896
SaqAI TTAA 7 cut(s) 192, 698, 834, 891, 1164, 1323, 1479
SatI GCNGC 5 cut(s) 24, 786, 885, 1293, 1371
Sau3AI GATC 3 cut(s) 688, 1016, 1042
Sau96I GGNCC 6 cut(s) 105, 346, 521, 1104, 1412, 1552
ScaI AGTACT 1 cut(s) 897
SchI GAGTC 2 cut(s) 561, 1190
ScrFI CCNGG 4 cut(s) 174, 633, 668, 870
SduI GDGCHC 2 cut(s) 1207, 1541
SfaNI GCATC 5 cut(s) 409, 664, 952, 1357, 1535
SfcI CTRYAG 3 cut(s) 806, 1512, 1532
SinI GGWCC 5 cut(s) 105, 346, 521, 1412, 1552
SmlI CTYRAG 2 cut(s) 91, 557
SmoI CTYRAG 2 cut(s) 91, 557
Sse9I AATT 7 cut(s) 49, 224, 644, 831, 888, 1333, 1436
SsiI CCGC 4 cut(s) 15, 866, 940, 1306
SspMI CTAG 3 cut(s) 84, 269, 308
StyD4I CCNGG 4 cut(s) 172, 631, 666, 868
StyI CCWWGG 2 cut(s) 315, 538
TaaI ACNGT 5 cut(s) 68, 550, 793, 1033, 1060
TaqI TCGA 3 cut(s) 148, 179, 905
TasI AATT 7 cut(s) 49, 224, 644, 831, 888, 1333, 1436
TatI WGTACW 2 cut(s) 823, 895
Tru1I TTAA 7 cut(s) 192, 698, 834, 891, 1164, 1323, 1479
Tru9I TTAA 7 cut(s) 192, 698, 834, 891, 1164, 1323, 1479
TscAI CASTG 4 cut(s) 71, 172, 796, 1246
TseFI GTSAC 1 cut(s) 1193
TseI GCWGC 5 cut(s) 23, 785, 884, 1292, 1370
Tsp45I GTSAC 1 cut(s) 1193
TspDTI ATGAA 3 cut(s) 18, 1164, 1378
TspGWI ACGGA 2 cut(s) 713, 1478
TspRI CASTG 4 cut(s) 71, 172, 796, 1246
VpaK11BI GGWCC 5 cut(s) 105, 346, 521, 1412, 1552
VspI ATTAAT 1 cut(s) 834
XagI CCTNNNNNAGG 1 cut(s) 1547
XapI RAATTY 2 cut(s) 644, 1333
XmiI GTMKAC 1 cut(s) 265
XmnI GAANNNNTTC 2 cut(s) 719, 1155
XspI CTAG 3 cut(s) 84, 269, 308
ZrmI AGTACT 1 cut(s) 897
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.