MD05G1020400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0017070
Physical Location & Seq
Reverse (-)
3482361 .. 3483098
738 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1020400.v1.1.491

Sequence Viewer

Length: 264 bp
ATGGGAAAGAAACATGATCTGTTGGTTGTAGTAGCGGTATTGCTGCTCATCTTTCTGGTCGGCCACACTCAAAGCTCTAGAGTACTTCATCGGAGCAGTCAAGTTTTCAAGGTAATGAAGCCTAGCGGCAGATCCGGTCATCAGAAACTGCATGACGGCAGCTTTTTTGCGTTCTTACCAAAAGCAAGGCCTATCCCACCGTCTGGTCCTTCCAGGAAGCACAATGCAATTGGTTTACAAAGCTCCTCGCAGCTCTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.48

Weight (kDa)

11.86

Isoelectric Point (pI)

63.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76952
fragaria_vesca FvH4_2g14270
malus_domestica MD05G1020400.v1.1
prunus_persica Prupe.8G024400_v2.0.a1
pyrus_communis pycom10g01450
rosa_chinensis RchiOBHm_Chr6g0276561
rosa_laevigata RLG00000013390
rosa_roxburghii Rroxscaffold_7G00192180
rosa_samantha Rh6AG212500 Rh6BG217400 Rh6CG219700 Rh6DG209300
rosa_wichuraiana Rw6G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 2 cut(s) 35, 126
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 61
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 4 cut(s) 75, 162, 243, 253
AluI AGCT 4 cut(s) 75, 162, 243, 253
AlwI GGATC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 2 cut(s) 61, 188
ApeKI GCWGC 3 cut(s) 43, 159, 250
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 30, 171
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 214
BfaI CTAG 2 cut(s) 78, 123
BisI GCNGC 4 cut(s) 44, 127, 160, 251
BlsI GCNGC 4 cut(s) 45, 128, 161, 252
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 30, 171
BshFI GGCC 2 cut(s) 63, 190
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 2 cut(s) 63, 190
Bsp143I GATC 2 cut(s) 16, 131
BspACI CCGC 2 cut(s) 35, 126
BspANI GGCC 2 cut(s) 63, 190
BspPI GGATC 1 cut(s) 126
BssMI GATC 2 cut(s) 16, 131
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 201
BstKTI GATC 2 cut(s) 19, 134
BstMBI GATC 2 cut(s) 16, 131
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 30, 171
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 2 cut(s) 63, 190
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 14, 152
CviJI RGCY 7 cut(s) 63, 75, 121, 162, 190, 243, 253
CviKI_1 RGCY 7 cut(s) 63, 75, 121, 162, 190, 243, 253
CviQI GTAC 1 cut(s) 83
DpnI GATC 2 cut(s) 18, 133
DpnII GATC 2 cut(s) 16, 131
EaeI YGGCCR 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 212
FaeI CATG 2 cut(s) 17, 155
FaiI YATR 2 cut(s) 15, 153
FatI CATG 2 cut(s) 13, 151
Fnu4HI GCNGC 4 cut(s) 44, 127, 160, 251
Fsp4HI GCNGC 4 cut(s) 44, 127, 160, 251
FspBI CTAG 2 cut(s) 78, 123
GluI GCNGC 4 cut(s) 44, 127, 160, 251
HaeIII GGCC 2 cut(s) 63, 190
HapII CCGG 1 cut(s) 135
Hin1II CATG 2 cut(s) 17, 155
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 93, 144
Hpy188III TCNNGA 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 151, 227
Hsp92II CATG 2 cut(s) 17, 155
Kzo9I GATC 2 cut(s) 16, 131
LmnI GCTCC 2 cut(s) 93, 248
LpnPI CCDG 5 cut(s) 41, 148, 189, 199, 226
Lsp1109I GCAGC 2 cut(s) 30, 171
MaeI CTAG 2 cut(s) 78, 123
MalI GATC 2 cut(s) 18, 133
MboI GATC 2 cut(s) 16, 131
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 131
MluCI AATT 1 cut(s) 228
MnlI CCTC 1 cut(s) 256
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 214
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 214
NdeII GATC 2 cut(s) 16, 131
NlaIII CATG 2 cut(s) 17, 155
PceI AGGCCT 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 212
PkrI GCNGC 4 cut(s) 45, 128, 161, 252
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspPI GGNCC 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SatI GCNGC 4 cut(s) 44, 127, 160, 251
Sau3AI GATC 2 cut(s) 16, 131
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 214
SetI ASST 6 cut(s) 77, 114, 164, 245, 255, 262
SinI GGWCC 1 cut(s) 206
Sse9I AATT 1 cut(s) 228
SseBI AGGCCT 1 cut(s) 190
SsiI CCGC 2 cut(s) 35, 126
SspMI CTAG 2 cut(s) 78, 123
StuI AGGCCT 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 201
TasI AATT 1 cut(s) 228
TatI WGTACW 1 cut(s) 82
TauI GCSGC 1 cut(s) 129
TseI GCWGC 3 cut(s) 43, 159, 250
TspDTI ATGAA 2 cut(s) 77, 131
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 77
XspI CTAG 2 cut(s) 78, 123
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.