RLG00000013390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017070
Physical Location & Seq
Reverse (-)
30844326 .. 30844912
587 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013390

Sequence Viewer

Length: 354 bp
ATGGGGAAAAGGCGTGATCGTGTTCTGGCAGTGACATGGTTGTTGCTTTTACTGATGCTCATCCTACTGGTTGGAAACACTCAAAGCTCAAGACCCCTTCTACCAGATGAGAGTACTAACAAAGTTTACAAGGTGATGAAGAAGCCCAACAACAGAAACTCTAATCAGAATTCATCGTCGTTGCAGCGTAGTTTCTTCGCATTCTTACCCAAGGCGACTCCAATCCCGCCATCCGGTCCTTCGAGGGAGCACAATGCTAGCATGCCAAGGTTGTTTATGGATATGGATTTGTCTCCTCCTAACAACTCGATCAGTTTAATGCAATATATACGGAGTATTTCTGAGAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.26

Weight (kDa)

10.67

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76952
fragaria_vesca FvH4_2g14270
malus_domestica MD05G1020400.v1.1
prunus_persica Prupe.8G024400_v2.0.a1
pyrus_communis pycom10g01450
rosa_chinensis RchiOBHm_Chr6g0276561
rosa_laevigata RLG00000013390
rosa_roxburghii Rroxscaffold_7G00192180
rosa_samantha Rh6AG212500 Rh6BG217400 Rh6CG219700 Rh6DG209300
rosa_wichuraiana Rw6G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 145
AsuNHI GCTAGC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmsI GCATC 1 cut(s) 45
BmtI GCTAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 210, 266
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 210, 266
BseGI GGATG 2 cut(s) 60, 230
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 297
BsmI GAATGC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 16, 309
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 210, 266
BssMI GATC 2 cut(s) 16, 309
BssT1I CCWWGG 2 cut(s) 210, 266
BstC8I GCNNGC 2 cut(s) 259, 263
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 60, 230
BstKTI GATC 2 cut(s) 19, 312
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 2 cut(s) 16, 309
BstNSI RCATGY 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 60, 230
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 259, 263
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 36, 262
CviJI RGCY 2 cut(s) 87, 145
CviKI_1 RGCY 2 cut(s) 87, 145
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 18, 311
DpnII GATC 2 cut(s) 16, 309
Eco130I CCWWGG 2 cut(s) 210, 266
Eco47I GGWCC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 210, 266
ErhI CCWWGG 2 cut(s) 210, 266
FaeI CATG 2 cut(s) 39, 265
FaiI YATR 7 cut(s) 37, 263, 278, 284, 327, 329, 352
FatI CATG 2 cut(s) 35, 261
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 47, 217
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 185
HapII CCGG 1 cut(s) 234
Hin1II CATG 2 cut(s) 39, 265
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 168, 343
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 107, 249
HpyCH4V TGCA 2 cut(s) 184, 322
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 2 cut(s) 39, 265
Kzo9I GATC 2 cut(s) 16, 309
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 11, 53, 117, 247
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 18, 311
MboI GATC 2 cut(s) 16, 309
MboII GAAGA 2 cut(s) 151, 187
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 2 cut(s) 237, 306
MseI TTAA 1 cut(s) 317
MspI CCGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 200
NdeII GATC 2 cut(s) 16, 309
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 2 cut(s) 39, 265
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PctI GAATGC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 236
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 16, 309
Sau96I GGNCC 1 cut(s) 236
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 252
SetI ASST 3 cut(s) 89, 135, 272
SfaNI GCATC 1 cut(s) 45
SinI GGWCC 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SphI GCATGC 1 cut(s) 265
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 2 cut(s) 210, 266
TaqI TCGA 2 cut(s) 242, 308
TasI AATT 1 cut(s) 169
TatI WGTACW 1 cut(s) 113
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 152, 162
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 265
XspI CTAG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.