Rh6DG209300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017070
Physical Location & Seq
Forward (+)
37282175 .. 37319222
37048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG209300.1

Sequence Viewer

Length: 411 bp
ATGAAAATTTTGAATATTCCTATGATGTTCTTATTCTTGTTTTTTGTTTTGTTCTATGGGCACTTTGTGCCATTCTTAAACCAACTCCTCTTCCTTCCCTCTCTTATATTTGGTGAAATGGGGAAAAGGCGTGATCGTGTTCTGGTAGTGACATGGTTGTTGCTTTTACTGATGCTCATCCTTCTGGTTGGGAACACTCAAAGCTCAAGACCCCTTCTACCAGATGAGCGTACTAACAAAGTTTACAAGGTGATGAAGAAGCCCAACAACAGAAACTCTGATCAGAATTCATCGTCGGTGCAGCGTAGTTTCTTCGCATTCTTACCCAAGGCGACTCCAATCCCGCCATCCGGTCCTTCGAGGGAGCACAATGGTATTGACTTAGAAAGCTCATCACAACTCTCCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.6

Weight (kDa)

10.27

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76952
fragaria_vesca FvH4_2g14270
malus_domestica MD05G1020400.v1.1
prunus_persica Prupe.8G024400_v2.0.a1
pyrus_communis pycom10g01450
rosa_chinensis RchiOBHm_Chr6g0276561
rosa_laevigata RLG00000013390
rosa_roxburghii Rroxscaffold_7G00192180
rosa_samantha Rh6AG212500 Rh6BG217400 Rh6CG219700 Rh6DG209300
rosa_wichuraiana Rw6G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 344
AcsI RAATTY 2 cut(s) 6, 286
AdeI CACNNNGTG 1 cut(s) 67
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 204, 390
AluI AGCT 2 cut(s) 204, 390
Alw21I GWGCWC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 2 cut(s) 6, 286
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 125, 262
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 355
BclI TGATCA 1 cut(s) 280
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmsI GCATC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse8I GATNNNNATC 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 2 cut(s) 177, 347
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 63
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 350
BsmI GAATGC 1 cut(s) 317
Bsp1286I GDGCHC 2 cut(s) 63, 369
Bsp143I GATC 2 cut(s) 133, 280
BspACI CCGC 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 2 cut(s) 133, 280
BssT1I CCWWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 382
BstF5I GGATG 2 cut(s) 177, 347
BstKTI GATC 2 cut(s) 136, 283
BstMBI GATC 2 cut(s) 133, 280
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 177, 347
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 153
CviJI RGCY 3 cut(s) 204, 262, 390
CviKI_1 RGCY 3 cut(s) 204, 262, 390
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 1 cut(s) 382
DpnI GATC 2 cut(s) 135, 282
DpnII GATC 2 cut(s) 133, 280
DraIII CACNNNGTG 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 1 cut(s) 156
FaiI YATR 4 cut(s) 23, 57, 107, 154
FatI CATG 1 cut(s) 152
FauI CCCGC 1 cut(s) 351
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 2 cut(s) 164, 334
Fsp4HI GCNGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 302
HapII CCGG 1 cut(s) 351
Hin1II CATG 1 cut(s) 156
HinfI GANTC 1 cut(s) 334
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 125, 262
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 280, 285
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 4 cut(s) 104, 191, 224, 366
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 133, 280
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 4 cut(s) 128, 170, 234, 364
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 135, 282
MboI GATC 2 cut(s) 133, 280
MboII GAAGA 3 cut(s) 82, 268, 304
MhlI GDGCHC 2 cut(s) 63, 369
MluCI AATT 2 cut(s) 6, 286
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 3 cut(s) 98, 109, 354
MseI TTAA 1 cut(s) 77
MspI CCGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 2 cut(s) 133, 280
NlaIII CATG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 148
PctI GAATGC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 353
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 133, 280
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 1 cut(s) 328
SduI GDGCHC 2 cut(s) 63, 369
SetI ASST 3 cut(s) 206, 252, 392
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 2 cut(s) 6, 286
SsiI CCGC 1 cut(s) 344
SspI AATATT 1 cut(s) 16
StyI CCWWGG 1 cut(s) 327
TaqI TCGA 1 cut(s) 359
TasI AATT 2 cut(s) 6, 286
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 17, 269, 279
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 2 cut(s) 6, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.