Prupe.8G024400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017070
Physical Location & Seq
Reverse (-)
2214889 .. 2216528
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G024400.1

Sequence Viewer

Length: 264 bp
ATGGGCAAAAGACATGATCATCAAATACTACTTGTAGTGGCGCTGCGGTTACTCCTGCTGCTCATCTTTCTGGTCGGCCATACTCAGAGCTCAAGAACATTGCAGAGTCAAGTTTTCAAGGTAATGAAGCCCAACTCTGATCACAATCCACATGAGGGTAGCTTTTTTGCATTCTTACCAAAAGCTTCGCCAATCCCTCCATCTGGACCTTCCAAGGAGCACAATGGTGTTGGGTTACAAAGCTCATCACAGCTCTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.53

Weight (kDa)

10.16

Isoelectric Point (pI)

68.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76952
fragaria_vesca FvH4_2g14270
malus_domestica MD05G1020400.v1.1
prunus_persica Prupe.8G024400_v2.0.a1
pyrus_communis pycom10g01450
rosa_chinensis RchiOBHm_Chr6g0276561
rosa_laevigata RLG00000013390
rosa_roxburghii Rroxscaffold_7G00192180
rosa_samantha Rh6AG212500 Rh6BG217400 Rh6CG219700 Rh6DG209300
rosa_wichuraiana Rw6G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 155, 203
AgsI TTSAA 1 cut(s) 118
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 5 cut(s) 90, 162, 185, 243, 253
AluI AGCT 5 cut(s) 90, 162, 185, 243, 253
Alw21I GWGCWC 2 cut(s) 92, 222
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 43, 58
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 92
Bbv12I GWGCWC 2 cut(s) 92, 222
BbvI GCAGC 2 cut(s) 30, 45
BccI CCATC 1 cut(s) 208
BclI TGATCA 2 cut(s) 16, 139
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 2 cut(s) 44, 59
BlsI GCNGC 2 cut(s) 45, 60
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 203
Bse3DI GCAATG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 213
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 155, 203
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 30, 45
BshFI GGCC 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 92, 222
BslI CCNNNNNNNGG 2 cut(s) 155, 203
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 92, 222
Bsp143I GATC 2 cut(s) 16, 139
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 16, 139
BssT1I CCWWGG 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 19, 142
BstMBI GATC 2 cut(s) 16, 139
BstV1I GCAGC 2 cut(s) 30, 45
BsuRI GGCC 1 cut(s) 78
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 206
CviAII CATG 2 cut(s) 14, 152
CviJI RGCY 7 cut(s) 78, 90, 130, 162, 185, 243, 253
CviKI_1 RGCY 7 cut(s) 78, 90, 130, 162, 185, 243, 253
DdeI CTNAG 1 cut(s) 84
DpnI GATC 2 cut(s) 18, 141
DpnII GATC 2 cut(s) 16, 139
EaeI YGGCCR 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 17, 155
FaiI YATR 3 cut(s) 15, 81, 153
FatI CATG 2 cut(s) 13, 151
FbaI TGATCA 2 cut(s) 16, 139
Fnu4HI GCNGC 2 cut(s) 44, 59
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 44, 59
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 44, 59
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 1 cut(s) 78
HhaI GCGC 1 cut(s) 43
Hin1II CATG 2 cut(s) 17, 155
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 87, 139
Hpy188III TCNNGA 2 cut(s) 93, 204
HpyAV CCTTC 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 103, 170
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 2 cut(s) 17, 155
HspAI GCGC 1 cut(s) 41
Ksp22I TGATCA 2 cut(s) 16, 139
Kzo9I GATC 2 cut(s) 16, 139
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 56, 68, 189
Lsp1109I GCAGC 2 cut(s) 30, 45
MaeIII GTNAC 2 cut(s) 48, 234
MalI GATC 2 cut(s) 18, 141
MboI GATC 2 cut(s) 16, 139
MhlI GDGCHC 2 cut(s) 92, 222
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 2 cut(s) 148, 207
MslI CAYNNNNRTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 170
NdeII GATC 2 cut(s) 16, 139
NlaIII CATG 2 cut(s) 17, 155
OliI CACNNNNGTG 1 cut(s) 225
PctI GAATGC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 45, 60
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 92
SatI GCNGC 2 cut(s) 44, 59
Sau3AI GATC 2 cut(s) 16, 139
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 115
SduI GDGCHC 2 cut(s) 92, 222
SetI ASST 8 cut(s) 92, 123, 164, 187, 211, 245, 255, 262
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SsiI CCGC 1 cut(s) 46
SstI GAGCTC 1 cut(s) 92
StyI CCWWGG 1 cut(s) 213
TseI GCWGC 2 cut(s) 43, 58
TspDTI ATGAA 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.