RchiOBHm_Chr6g0276561

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
38689148 .. 38689815
668 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24810

Sequence Viewer

Length: 294 bp
ATGGGGAAAAGGCGTGATCGTGTTCTGGTAGTGACATGGTTGTTGCTTTTACTGATGCTCATCCTTCTGGTTGGGAACACTCAAAGCTCAAGACCCCTTCTACCAGATGAGCGTACTAACAAAGTTTACAAGGTGATGAAGAAGCCCAACAACAGAAACTCTGATCAGAATTCATCGTCGGTGCAGCGTAGTTTCTTCGCATTCTTACCCAAGGCGACTCCAATCCCGCCATCCGGTCCTTCGAGGGAGCACAATGGTATTGACTTAGAAAGCTCATCACAACTCTCCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.92

Weight (kDa)

10.63

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76952
fragaria_vesca FvH4_2g14270
malus_domestica MD05G1020400.v1.1
prunus_persica Prupe.8G024400_v2.0.a1
pyrus_communis pycom10g01450
rosa_chinensis RchiOBHm_Chr6g0276561
rosa_laevigata RLG00000013390
rosa_roxburghii Rroxscaffold_7G00192180
rosa_samantha Rh6AG212500 Rh6BG217400 Rh6CG219700 Rh6DG209300
rosa_wichuraiana Rw6G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 87, 273
AluI AGCT 2 cut(s) 87, 273
Alw21I GWGCWC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 238
BclI TGATCA 1 cut(s) 163
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmsI GCATC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 60, 230
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 233
BsmI GAATGC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 16, 163
BspACI CCGC 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 16, 163
BssT1I CCWWGG 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 2 cut(s) 60, 230
BstKTI GATC 2 cut(s) 19, 166
BstMBI GATC 2 cut(s) 16, 163
BstV1I GCAGC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 60, 230
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 36
CviJI RGCY 3 cut(s) 87, 145, 273
CviKI_1 RGCY 3 cut(s) 87, 145, 273
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 265
DpnI GATC 2 cut(s) 18, 165
DpnII GATC 2 cut(s) 16, 163
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 39
FaiI YATR 1 cut(s) 37
FatI CATG 1 cut(s) 35
FauI CCCGC 1 cut(s) 234
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 47, 217
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HapII CCGG 1 cut(s) 234
Hin1II CATG 1 cut(s) 39
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 163, 168
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 3 cut(s) 74, 107, 249
HpyCH4V TGCA 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 265
Hsp92II CATG 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 16, 163
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 11, 53, 117, 247
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 18, 165
MboI GATC 2 cut(s) 16, 163
MboII GAAGA 2 cut(s) 151, 187
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 1 cut(s) 237
MspI CCGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 200
NdeII GATC 2 cut(s) 16, 163
NlaIII CATG 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 31
PctI GAATGC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 236
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 16, 163
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 252
SetI ASST 3 cut(s) 89, 135, 275
SfaNI GCATC 1 cut(s) 45
SinI GGWCC 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 227
StyI CCWWGG 1 cut(s) 210
TaqI TCGA 1 cut(s) 242
TasI AATT 1 cut(s) 169
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 152, 162
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.