Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0018399

Physical Location & Seq

Genomic Coordinates Forward (+)

34259621 .. 34260028

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1211300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGGATGAGGTGGTGTTGTTGGATTTCTGGGCAAGCCCATTTGCGATGAGGCTGAGGATTGCACTGCCTGAGAAGGGCATTGAGTACAAGCATAAAGATGAGGACTTGTGGAACAAAAGCCCACTGTTGCTGCAGATGAACCCGATTCACAAGAAGATCCCGGTTATCGTTCACAATGGAAAACCGGTCTACGAGTCCTTGGTTGCACTTCAGTACATTGATGAGGTTTGCAAGGATAAAGCTCCTCTGTTGCCTTCTGACTCTTACCTTAGAGCCAAAGCCAGGTTCTGGGCTGACTTCGTCGACAAGAAGGTATTTTTTTATAAGAACATGCAAGATCTTTTTGCAAATAAAATAATGTTGTTTTCAACTTACAATTCAGGTTTAGGATTTATAAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

136

Amino Acids

15.76

Weight (kDa)

8.57

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 76	3.6e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 76	5.8e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	12 - 76	4e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16360
malus_domestica	MD05G1211300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027401
rosa_laevigata	RLG00000033017
rosa_multiflora	Rmu_co8135500.1_g000001 Rmu_sc0007802.1_g000014
rosa_roxburghii	Rroxscaffold_1G00052120
rosa_samantha	Rh5AG192900 Rh5DG192300
rosa_wichuraiana	Rw5G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	327, 398
AccB7I	CCANNNNNTGG	1 cut(s)	291
AccI	GTMKAC	2 cut(s)	192, 306
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	89, 218
AfiI	CCNNNNNNNGG	3 cut(s)	77, 285, 291
AgeI	ACCGGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	372
AjnI	CCWGG	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
AlwI	GGATC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	133
AsiGI	ACCGGT	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	134
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	2 cut(s)	164, 286
BmrFI	CCNGG	2 cut(s)	164, 286
Bpu10I	CCTNAGC	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 285, 291
Bse118I	RCCGGY	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	3 cut(s)	77, 285, 291
BseMII	CTCAG	2 cut(s)	47, 63
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	120
BshTI	ACCGGT	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	164, 188
BslI	CCNNNNNNNGG	3 cut(s)	77, 285, 291
Bsp143I	GATC	2 cut(s)	159, 340
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	48, 64
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	159, 340
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	3 cut(s)	56, 72, 272
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	2 cut(s)	162, 343
BstMBI	GATC	2 cut(s)	159, 340
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	162, 284
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	159, 340
BstYI	RGATCY	2 cut(s)	159, 340
BtgZI	GCGATG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	65, 125
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	88, 217
CspAI	ACCGGT	1 cut(s)	187
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	7 cut(s)	39, 55, 123, 245, 278, 284, 296
CviKI_1	RGCY	7 cut(s)	39, 55, 123, 245, 278, 284, 296
CviQI	GTAC	2 cut(s)	88, 217
DdeI	CTNAG	3 cut(s)	56, 72, 272
DpnI	GATC	2 cut(s)	161, 342
DpnII	GATC	2 cut(s)	159, 340
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	337
FaiI	YATR	4 cut(s)	96, 327, 335, 398
FatI	CATG	1 cut(s)	333
FblI	GTMKAC	2 cut(s)	192, 306
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	134
HapII	CCGG	2 cut(s)	164, 188
Hin1II	CATG	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	148, 197, 263
HpaII	CCGG	2 cut(s)	164, 188
Hpy166II	GTNNAC	3 cut(s)	175, 193, 307
Hpy188I	TCNGA	1 cut(s)	262
Hpy8I	GTNNAC	3 cut(s)	175, 193, 307
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	70, 267, 307
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	6 cut(s)	65, 136, 209, 234, 337, 350
HpyF3I	CTNAG	3 cut(s)	56, 72, 272
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	159, 340
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	8 cut(s)	16, 84, 177, 201, 271, 277, 298, 369
Lsp1109I	GCAGC	1 cut(s)	120
MalI	GATC	2 cut(s)	161, 342
MboI	GATC	2 cut(s)	159, 340
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	2 cut(s)	159, 340
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	2 cut(s)	206, 257
MnlI	CCTC	6 cut(s)	4, 45, 51, 97, 220, 258
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	2 cut(s)	164, 188
MspR9I	CCNGG	2 cut(s)	164, 286
MvaI	CCWGG	1 cut(s)	286
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	2 cut(s)	159, 340
NlaIII	CATG	1 cut(s)	337
NspI	RCATGY	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	291
PinAI	ACCGGT	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	2 cut(s)	205, 257
PpsI	GAGTC	2 cut(s)	205, 257
PsiI	TTATAA	2 cut(s)	327, 398
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	2 cut(s)	159, 340
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	89, 218
RsaNI	GTAC	2 cut(s)	88, 217
RseI	CAYNNNNRTG	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	305
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	159, 340
SchI	GAGTC	2 cut(s)	206, 257
ScrFI	CCNGG	2 cut(s)	164, 286
SetI	ASST	7 cut(s)	15, 231, 247, 273, 290, 318, 388
SfcI	CTRYAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	2 cut(s)	162, 284
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	379
TatI	WGTACW	2 cut(s)	87, 216
TfiI	GAWTC	1 cut(s)	148
TscAI	CASTG	2 cut(s)	72, 132
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	72, 132
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	291
XceI	RCATGY	1 cut(s)	337
XmiI	GTMKAC	2 cut(s)	192, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.