Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007802.1

Orthogroup ID

OG0018399

Physical Location & Seq

Genomic Coordinates Reverse (-)

38029 .. 39140

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007802.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggcggatgaggtggtgttgttgggattcttgccgagcccatttgcggcgaggttgaagattgcactggctgagaagggggtcgagtatgagtacaaggaggaggacttgaggagcaagagtccactacttgtgcagatgaacccggttcgcaagaaagttccggttctcattcacaatggcaaaccgatttgtgagtccctcattgcgcttcagtacatcgatgaggtttggaacgataaggctccactgttgccctcggatcctggccttcgggcccaagccaggttctgggcagactttattgacaagaaggagatggtatgggcagccaaagaagaagaacatgaggcagcgaaggaattttttgattgcattggggtgttagaaggacagcttggagacaaagctttctttgggggtgagactcttgggtttgtggatgtggcagttattccattctatagctggctttctgtgtttgaaaaatacggaaattgcagtgtagaagccaagcatccaaagttcactgcatggactaagaggtgcatggagaaggagagtgtgtcaaagtctcttcctgatcagcgaagggtctatgactttaaggttgggggcatattaaccaagttatcagtcgatcaagacctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

217

Amino Acids

24.58

Weight (kDa)

5.4

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16360
malus_domestica	MD05G1211300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027401
rosa_laevigata	RLG00000033017
rosa_multiflora	Rmu_co8135500.1_g000001 Rmu_sc0007802.1_g000014
rosa_roxburghii	Rroxscaffold_1G00052120
rosa_samantha	Rh5AG192900 Rh5DG192300
rosa_wichuraiana	Rw5G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	291
AciI	CCGC	2 cut(s)	5, 47
AclWI	GGATC	2 cut(s)	257, 270
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	95, 218
AfiI	CCNNNNNNNGG	3 cut(s)	46, 285, 291
AgsI	TTSAA	2 cut(s)	58, 485
AjnI	CCWGG	2 cut(s)	265, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	3 cut(s)	397, 410, 468
AluI	AGCT	3 cut(s)	397, 410, 468
Alw26I	GTCTC	3 cut(s)	396, 419, 579
AlwI	GGATC	2 cut(s)	257, 270
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	2 cut(s)	268, 276
ApaI	GGGCCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	329, 353
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	276, 277
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	2 cut(s)	41, 280
BbvI	GCAGC	2 cut(s)	341, 365
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	2 cut(s)	267, 286
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	3 cut(s)	396, 419, 579
BfmI	CTRYAG	1 cut(s)	463
BisI	GCNGC	3 cut(s)	48, 330, 354
BlsI	GCNGC	3 cut(s)	49, 331, 355
Bme1390I	CCNGG	3 cut(s)	146, 267, 286
BmgT120I	GGNCC	2 cut(s)	276, 277
BmiI	GGNNCC	3 cut(s)	246, 264, 278
BmrFI	CCNGG	3 cut(s)	146, 267, 286
BmsI	GCATC	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 551, 581
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 285, 291
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	267, 286
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	13, 448, 517
BseLI	CCNNNNNNNGG	3 cut(s)	46, 285, 291
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	116, 127
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	341, 365
BsgI	GTGCAG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	270, 278
BshVI	ATCGAT	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	146, 164
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	46, 285, 291
BsmAI	GTCTC	3 cut(s)	396, 419, 579
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	270, 278
Bsp120I	GGGCCC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	41, 280
Bsp143I	GATC	3 cut(s)	262, 583, 640
BspACI	CCGC	2 cut(s)	5, 47
BspANI	GGCC	2 cut(s)	270, 278
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	246, 264, 278
BspPI	GGATC	2 cut(s)	257, 270
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	262, 583, 640
Bst2UI	CCWGG	2 cut(s)	267, 286
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	72, 540
BstF5I	GGATG	3 cut(s)	13, 448, 517
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	3 cut(s)	265, 586, 643
BstMAI	GTCTC	3 cut(s)	396, 419, 579
BstMBI	GATC	3 cut(s)	262, 583, 640
BstNI	CCWGG	2 cut(s)	267, 286
BstSCI	CCNGG	3 cut(s)	144, 265, 284
BstSFI	CTRYAG	1 cut(s)	463
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	341, 365
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	270, 278
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	13, 448, 517
BtsI	GCAGTG	2 cut(s)	508, 528
BtsIMutI	CAGTG	4 cut(s)	65, 248, 508, 528
Cac8I	GCNNGC	1 cut(s)	470
CaiI	CAGNNNCTG	1 cut(s)	291
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	276, 277
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	94, 217
CviAII	CATG	3 cut(s)	347, 534, 550
CviQI	GTAC	2 cut(s)	94, 217
DdeI	CTNAG	2 cut(s)	72, 540
DpnI	GATC	3 cut(s)	264, 585, 642
DpnII	GATC	3 cut(s)	262, 583, 640
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	2 cut(s)	41, 280
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	265, 284
EcoT38I	GRGCYC	2 cut(s)	41, 280
FaeI	CATG	3 cut(s)	350, 537, 553
FaiI	YATR	8 cut(s)	90, 325, 348, 465, 535, 551, 600, 620
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	3 cut(s)	346, 533, 549
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	3 cut(s)	48, 330, 354
FokI	GGATG	3 cut(s)	20, 455, 504
FriOI	GRGCYC	2 cut(s)	41, 280
Fsp4HI	GCNGC	3 cut(s)	48, 330, 354
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	3 cut(s)	48, 330, 354
HaeIII	GGCC	2 cut(s)	270, 278
HapII	CCGG	2 cut(s)	146, 164
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	3 cut(s)	350, 537, 553
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	4 cut(s)	27, 121, 197, 427
HpaII	CCGG	2 cut(s)	146, 164
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	125, 528
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	581, 644
Hpy8I	GTNNAC	2 cut(s)	125, 528
HpyAV	CCTTC	7 cut(s)	70, 281, 307, 352, 383, 550, 585
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	6 cut(s)	65, 136, 375, 501, 533, 549
HpyF3I	CTNAG	2 cut(s)	72, 540
Hsp92II	CATG	3 cut(s)	350, 537, 553
HspAI	GCGC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	3 cut(s)	262, 583, 640
LmnI	GCTCC	2 cut(s)	114, 250
Lsp1109I	GCAGC	2 cut(s)	341, 365
LweI	GCATC	1 cut(s)	526
MalI	GATC	3 cut(s)	264, 585, 642
MboI	GATC	3 cut(s)	262, 583, 640
MboII	GAAGA	4 cut(s)	70, 350, 353, 569
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	41, 280
MluCI	AATT	2 cut(s)	362, 496
MlyI	GAGTC	3 cut(s)	130, 206, 421
MseI	TTAA	2 cut(s)	606, 623
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	2 cut(s)	146, 164
MspR9I	CCNGG	3 cut(s)	146, 267, 286
MvaI	CCWGG	2 cut(s)	267, 286
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	3 cut(s)	262, 583, 640
NlaIII	CATG	3 cut(s)	350, 537, 553
NlaIV	GGNNCC	3 cut(s)	246, 264, 278
NmeAIII	GCCGAG	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	291
PkrI	GCNGC	3 cut(s)	49, 331, 355
PleI	GAGTC	3 cut(s)	129, 205, 421
PpsI	GAGTC	3 cut(s)	129, 205, 421
Psp6I	CCWGG	2 cut(s)	265, 284
PspGI	CCWGG	2 cut(s)	265, 284
PspN4I	GGNNCC	3 cut(s)	246, 264, 278
PspOMI	GGGCCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	276, 277
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	2 cut(s)	95, 218
RsaNI	GTAC	2 cut(s)	94, 217
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	606, 623
SatI	GCNGC	3 cut(s)	48, 330, 354
Sau3AI	GATC	3 cut(s)	262, 583, 640
Sau96I	GGNCC	2 cut(s)	276, 277
SchI	GAGTC	3 cut(s)	130, 206, 421
ScrFI	CCNGG	3 cut(s)	146, 267, 286
SduI	GDGCHC	2 cut(s)	41, 280
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	362, 496
SsiI	CCGC	2 cut(s)	5, 47
StyD4I	CCNGG	3 cut(s)	144, 265, 284
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	84, 222, 639
TasI	AATT	2 cut(s)	362, 496
TatI	WGTACW	2 cut(s)	93, 216
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	606, 623
Tru9I	TTAA	2 cut(s)	606, 623
TscAI	CASTG	4 cut(s)	72, 255, 508, 535
TseI	GCWGC	2 cut(s)	329, 353
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	4 cut(s)	72, 255, 508, 535
Van91I	CCANNNNNTGG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.