Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8135500.1

Orthogroup ID

OG0018399

Physical Location & Seq

Genomic Coordinates Forward (+)

283 .. 624

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8135500.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggcggatgaggtggtgttgttgggattcttgccgagcccatttgcggcgaggttgaagattgcactggctgagaagggggtcgagtatgagtacaaggaggaggacttgaggagcaagagtccactacttgtgcagatgaacccggttcgcaagaaagttccggttctcattcacaatggcaaaccgatttgtgagtccctcattgcgcttcagtacatcgatgaggtttggaacgataaggctccactgttgccctcggatcctggccttcgggcccaagccaggttctgggcagactttattgacaagaaggttagttgctttgtaatttgtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

113

Amino Acids

12.8

Weight (kDa)

6.57

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16360
malus_domestica	MD05G1211300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0027401
rosa_laevigata	RLG00000033017
rosa_multiflora	Rmu_co8135500.1_g000001 Rmu_sc0007802.1_g000014
rosa_roxburghii	Rroxscaffold_1G00052120
rosa_samantha	Rh5AG192900 Rh5DG192300
rosa_wichuraiana	Rw5G017560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	291
AciI	CCGC	2 cut(s)	5, 47
AclWI	GGATC	2 cut(s)	257, 270
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	95, 218
AfiI	CCNNNNNNNGG	3 cut(s)	46, 285, 291
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	265, 284
AlwI	GGATC	2 cut(s)	257, 270
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	2 cut(s)	268, 276
ApaI	GGGCCC	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	276, 277
AsuC2I	CCSGG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	2 cut(s)	41, 280
BciT130I	CCWGG	2 cut(s)	267, 286
BcnI	CCSGG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	146, 267, 286
BmgT120I	GGNCC	2 cut(s)	276, 277
BmiI	GGNNCC	3 cut(s)	246, 264, 278
BmrFI	CCNGG	3 cut(s)	146, 267, 286
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 285, 291
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	267, 286
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	3 cut(s)	46, 285, 291
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	116, 127
BseSI	GKGCMC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	270, 278
BshVI	ATCGAT	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	146, 164
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	46, 285, 291
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	270, 278
Bsp120I	GGGCCC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	41, 280
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	2 cut(s)	5, 47
BspANI	GGCC	2 cut(s)	270, 278
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	246, 264, 278
BspPI	GGATC	2 cut(s)	257, 270
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	267, 286
Bst4CI	ACNGT	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	267, 286
BstSCI	CCNGG	3 cut(s)	144, 265, 284
BstSLI	GKGCMC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	270, 278
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	65, 248
CaiI	CAGNNNCTG	1 cut(s)	291
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	276, 277
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	94, 217
CviJI	RGCY	6 cut(s)	39, 71, 245, 270, 278, 284
CviKI_1	RGCY	6 cut(s)	39, 71, 245, 270, 278, 284
CviQI	GTAC	2 cut(s)	94, 217
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	2 cut(s)	41, 280
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	265, 284
EcoT38I	GRGCYC	2 cut(s)	41, 280
FaiI	YATR	1 cut(s)	90
FaqI	GGGAC	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	2 cut(s)	41, 280
Fsp4HI	GCNGC	1 cut(s)	48
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	270, 278
HapII	CCGG	2 cut(s)	146, 164
HhaI	GCGC	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	3 cut(s)	27, 121, 197
HpaII	CCGG	2 cut(s)	146, 164
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	70, 281, 307
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	65, 136
HpyF3I	CTNAG	1 cut(s)	72
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	2 cut(s)	114, 250
LpnPI	CCDG	8 cut(s)	53, 159, 177, 252, 271, 277, 279, 298
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	41, 280
MluCI	AATT	1 cut(s)	330
MlyI	GAGTC	2 cut(s)	130, 206
MnlI	CCTC	8 cut(s)	4, 45, 94, 97, 105, 212, 220, 268
MspI	CCGG	2 cut(s)	146, 164
MspR9I	CCNGG	3 cut(s)	146, 267, 286
MvaI	CCWGG	2 cut(s)	267, 286
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	262
NlaIV	GGNNCC	3 cut(s)	246, 264, 278
NmeAIII	GCCGAG	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	129, 205
PpsI	GAGTC	2 cut(s)	129, 205
Psp6I	CCWGG	2 cut(s)	265, 284
PspGI	CCWGG	2 cut(s)	265, 284
PspN4I	GGNNCC	3 cut(s)	246, 264, 278
PspOMI	GGGCCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	276, 277
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	2 cut(s)	95, 218
RsaNI	GTAC	2 cut(s)	94, 217
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	276, 277
SchI	GAGTC	2 cut(s)	130, 206
ScrFI	CCNGG	3 cut(s)	146, 267, 286
SduI	GDGCHC	2 cut(s)	41, 280
SetI	ASST	5 cut(s)	15, 56, 231, 290, 318
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	5, 47
StyD4I	CCNGG	3 cut(s)	144, 265, 284
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	84, 222
TasI	AATT	1 cut(s)	330
TatI	WGTACW	2 cut(s)	93, 216
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	27
TscAI	CASTG	2 cut(s)	72, 255
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	72, 255
Van91I	CCANNNNNTGG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.