MD05G1236000.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0019752
Physical Location & Seq
Reverse (-)
36753421 .. 36754467
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1236000.v1.1.491

Sequence Viewer

Length: 162 bp
ATGGCGGGATCAGCAGTTAACAAAGTATCGACTCTGGAGAATACAGCTGCTTTAAAGGCTGGTTTGAAAAGTATGAAGAAGCGAAAAGGCATACTTTGTAGTTCGGCGTGTAAGGTTGAACCAGACTGTACTTGTTATGCAAAGTTGTGTTACACATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

54

Amino Acids

5.57

Weight (kDa)

9.3

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019752)

Species Orthologous Gene IDs
malus_domestica MD05G1236000.v1.1 MD14G1179200.v1.1 MD14G1179300.v1.1
pyrus_communis pycom05g21270 pycom05g21310 pycom05g23790 pycom05g24070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 16
AfaI GTAC 1 cut(s) 130
AgsI TTSAA 2 cut(s) 67, 119
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
AlwI GGATC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 34
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 1 cut(s) 5
BspPI GGATC 1 cut(s) 16
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 128
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 11, 56
BstV1I GCAGC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 129
CviJI RGCY 2 cut(s) 47, 59
CviKI_1 RGCY 2 cut(s) 47, 59
CviQI GTAC 1 cut(s) 129
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
DraI TTTAAA 1 cut(s) 54
FaiI YATR 3 cut(s) 74, 92, 138
FalI AAGNNNNNCTT 2 cut(s) 78, 110
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
FspEI CC 7 cut(s) 20, 41, 45, 72, 89, 98, 135
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 56
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 35, 159
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 56
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 20, 45, 135
Lsp1109I GCAGC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 88
MlyI GAGTC 1 cut(s) 25
MseI TTAA 2 cut(s) 18, 53
MspA1I CMGCKG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 11, 56
NdeII GATC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 18, 53
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 8
SchI GAGTC 1 cut(s) 25
SetI ASST 2 cut(s) 49, 117
SgeI CNNG 6 cut(s) 18, 47, 72, 120, 134, 144
SsiI CCGC 1 cut(s) 5
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 29
TatI WGTACW 1 cut(s) 128
Tru1I TTAA 2 cut(s) 18, 53
Tru9I TTAA 2 cut(s) 18, 53
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.