MD14G1179200.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0019752
Physical Location & Seq
Forward (+)
27174437 .. 27190576
16140 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1179200.v1.1.491

Sequence Viewer

Length: 546 bp
ATGAATCAAACAGACAGAACCTCTGCAACGGTCGACTGTTCATCTCCGAAGATGAGAATCCGAGAAGGGCAAGAGATATCTCCAGACGACGTCGTGGAAGAAATTGGATCATCGACAGAGCGGAGCGCTGTGGCACTTGAAAAGCGAGGCAAAATGCTGGCTGCTAAGCCCAAATTCGGCATAGGACGGAATCGGGTTGAAGTTCAAGTGGTGCGGAACCGCAATTCTTGGTTCTTCTGCTGGTTTAAAGTTGTGTTAAGGTCCCAAGTTTTTAAGGTTTATACAGAAAGTGACACTGCTAAAGCTGATGCCGGGAGCAGGACTTGTGCAGCGGTTAACGAAGTATGGACTCAGGAGAACGCAGCTGCTTTTAACGCTGGGCTGAAAAGTATGGAGAAGCGAAAAGGCATACTTGGTAGTTCGGCAGCAAATGCAAATGTTGTAAGAAGGGCATTGGCTGATGTCAGCAACGTCAAAAGCAATTCTTCTAGGTTTGTGGGGGTGATGCCTCGAAGAAAGTTGGGTTTCAATGGGTACATCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

182

Amino Acids

20.01

Weight (kDa)

10.17

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019752)

Species Orthologous Gene IDs
malus_domestica MD05G1236000.v1.1 MD14G1179200.v1.1 MD14G1179300.v1.1
pyrus_communis pycom05g21270 pycom05g21310 pycom05g23790 pycom05g24070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccBSI CCGCTC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 33
AciI CCGC 4 cut(s) 121, 214, 220, 332
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 536
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 176, 318
AgsI TTSAA 4 cut(s) 140, 200, 206, 529
AluBI AGCT 2 cut(s) 305, 365
AluI AGCT 2 cut(s) 305, 365
AlwI GGATC 1 cut(s) 115
Aor51HI AGCGCT 1 cut(s) 127
ApeKI GCWGC 5 cut(s) 161, 329, 362, 365, 425
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 1 cut(s) 261
BaeI ACNNNNGTAYC 1 cut(s) 526
BbvI GCAGC 5 cut(s) 148, 341, 352, 374, 437
BcnI CCSGG 1 cut(s) 313
BfaI CTAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 5 cut(s) 162, 330, 363, 366, 426
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 5 cut(s) 163, 331, 364, 367, 427
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 218, 263
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 2 cut(s) 298, 495
BpmI CTGGAG 1 cut(s) 66
Bpu1102I GCTNAGC 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 318
Bse8I GATNNNNATC 1 cut(s) 56
BseGI GGATG 1 cut(s) 537
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 2 cut(s) 176, 318
BseMII CTCAG 1 cut(s) 365
BseXI GCAGC 5 cut(s) 148, 341, 352, 374, 437
BseYI CCCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 348
Bsh1285I CGRYCG 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 176, 318
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 107
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 4 cut(s) 121, 214, 220, 332
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 218, 263
BspPI GGATC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 121
BssMI GATC 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 31, 38
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 165, 351
BstF5I GGATG 1 cut(s) 537
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 110
BstMBI GATC 1 cut(s) 107
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 374, 431
BstSCI CCNGG 1 cut(s) 311
BstV1I GCAGC 5 cut(s) 148, 341, 352, 374, 437
BtsCI GGATG 1 cut(s) 537
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 535
CviJI RGCY 6 cut(s) 161, 169, 305, 365, 382, 458
CviKI_1 RGCY 6 cut(s) 161, 169, 305, 365, 382, 458
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 2 cut(s) 165, 351
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
DraI TTTAAA 1 cut(s) 247
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 261
Eco47III AGCGCT 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 261
EcoRV GATATC 1 cut(s) 78
FaiI YATR 5 cut(s) 182, 282, 346, 392, 410
FalI AAGNNNNNCTT 4 cut(s) 396, 428, 469, 501
FaqI GGGAC 1 cut(s) 247
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 5 cut(s) 162, 330, 363, 366, 426
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 5 cut(s) 162, 330, 363, 366, 426
FspBI CTAG 1 cut(s) 489
GlaI GCGC 1 cut(s) 127
GluI GCNGC 5 cut(s) 162, 330, 363, 366, 426
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 90
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 2 cut(s) 34, 337
HindII GTYRAC 2 cut(s) 34, 337
HinfI GANTC 4 cut(s) 4, 57, 190, 349
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 2 cut(s) 34, 337
Hpy188I TCNGA 2 cut(s) 48, 62
Hpy188III TCNNGA 2 cut(s) 83, 353
Hpy8I GTNNAC 2 cut(s) 34, 337
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 2 cut(s) 59, 441
HpyCH4III ACNGT 2 cut(s) 31, 38
HpyCH4IV ACGT 2 cut(s) 90, 471
HpyCH4V TGCA 3 cut(s) 26, 329, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 431
HpyF3I CTNAG 2 cut(s) 165, 351
HpySE526I ACGT 2 cut(s) 90, 471
Hsp92I GRCGYC 1 cut(s) 90
HspAI GCGC 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 123, 315
LpnPI CCDG 7 cut(s) 96, 143, 226, 304, 325, 338, 363
Lsp1109I GCAGC 5 cut(s) 148, 341, 352, 374, 437
LweI GCATC 2 cut(s) 298, 495
MaeI CTAG 1 cut(s) 489
MaeII ACGT 2 cut(s) 90, 471
MaeIII GTNAC 1 cut(s) 290
MalI GATC 1 cut(s) 109
MbiI CCGCTC 1 cut(s) 121
MboI GATC 1 cut(s) 107
MboII GAAGA 5 cut(s) 61, 110, 226, 477, 525
MluCI AATT 4 cut(s) 102, 173, 223, 481
MlyI GAGTC 1 cut(s) 343
MnlI CCTC 3 cut(s) 31, 140, 519
MseI TTAA 5 cut(s) 246, 257, 273, 336, 372
MspA1I CMGCKG 2 cut(s) 332, 365
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 313
MwoI GCNNNNNNNGC 2 cut(s) 374, 431
NciI CCSGG 1 cut(s) 313
NdeII GATC 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 218, 263
NmuCI GTSAC 1 cut(s) 290
PfeI GAWTC 3 cut(s) 4, 57, 190
PflFI GACNNNGTC 1 cut(s) 89
PkrI GCNGC 5 cut(s) 163, 331, 364, 367, 427
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 218, 263
PspPI GGNCC 1 cut(s) 261
PspPPI RGGWCCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 5 cut(s) 246, 257, 273, 336, 372
SatI GCNGC 5 cut(s) 162, 330, 363, 366, 426
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 313
SetI ASST 8 cut(s) 23, 93, 263, 279, 307, 367, 474, 494
SfaNI GCATC 2 cut(s) 298, 495
SinI GGWCC 1 cut(s) 261
Sse9I AATT 4 cut(s) 102, 173, 223, 481
SsiI CCGC 4 cut(s) 121, 214, 220, 332
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 31, 38
TaiI ACGT 2 cut(s) 93, 474
TaqI TCGA 3 cut(s) 33, 113, 511
TasI AATT 4 cut(s) 102, 173, 223, 481
TfiI GAWTC 3 cut(s) 4, 57, 190
Tru1I TTAA 5 cut(s) 246, 257, 273, 336, 372
Tru9I TTAA 5 cut(s) 246, 257, 273, 336, 372
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 5 cut(s) 161, 329, 362, 365, 425
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 17, 30
TspGWI ACGGA 2 cut(s) 202, 530
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 489
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.