pycom05g24070

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0019752
Physical Location & Seq
Forward (+)
25628225 .. 25629533
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g24070.4

Sequence Viewer

Length: 456 bp
ATGACGTCGTTTAAGAAATTGGATCATCGGCAGAGCACTACCACACTTGTAGAGAGAAGCAAAATGTTGGCTGCTAAGGTCGGAAAAATCCATAAAGCCAGAATTCGGCGTAGGACAGAAAACTCAACATGCTCACGTGGTGTGGAACCGCAATTCTGGGTTCTTCTGCTGGTTTTAAGGTCTTGTGGTGGTGATTTATTTACTTCTGACCTTCTTTTTCGATATTTTAAACAGTTGGTGTCTCAAGTTTTAAGGTTTATACAGAAAGTGACACTGCCAAAGCTGATGCTGGGATCGGTTAACAAAGTATCGGCTGTGGAGAATGCAGCTTCTTTAAAGGCTGGTTTGAAATGTATGGAGAAGCAAAAAGGCATACTTGGTAGTTCTTGCAGCAAATGCAAATGTTGGAAGAAGAGCATTGGCCGATGTCTGCAATGGCAAAAGCAACTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

152

Amino Acids

17.17

Weight (kDa)

10.37

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019752)

Species Orthologous Gene IDs
malus_domestica MD05G1236000.v1.1 MD14G1179200.v1.1 MD14G1179300.v1.1
pyrus_communis pycom05g21270 pycom05g21310 pycom05g23790 pycom05g24070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AciI CCGC 1 cut(s) 149
AclWI GGATC 2 cut(s) 30, 301
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 1 cut(s) 102
AcvI CACGTG 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 349
AluBI AGCT 2 cut(s) 283, 329
AluI AGCT 2 cut(s) 283, 329
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 2 cut(s) 30, 301
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 3 cut(s) 71, 326, 390
ApoI RAATTY 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 203
BbrPI CACGTG 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 3 cut(s) 58, 338, 402
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 454
BisI GCNGC 3 cut(s) 72, 327, 391
BlsI GCNGC 3 cut(s) 73, 328, 392
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 440
BseXI GCAGC 3 cut(s) 58, 338, 402
BseYI CCCAGC 1 cut(s) 289
BshFI GGCC 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 22, 293
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 2 cut(s) 30, 301
BspQI GCTCTTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 440
BssMI GATC 2 cut(s) 22, 293
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 75
BstKTI GATC 2 cut(s) 25, 296
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 2 cut(s) 22, 293
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 58, 338, 402
BsuRI GGCC 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 272
CviAII CATG 1 cut(s) 129
CviJI RGCY 7 cut(s) 71, 98, 283, 314, 329, 341, 423
CviKI_1 RGCY 7 cut(s) 71, 98, 283, 314, 329, 341, 423
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 24, 295
DpnII GATC 2 cut(s) 22, 293
DraI TTTAAA 2 cut(s) 229, 336
DraIII CACNNNGTG 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco72I CACGTG 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 102
FaeI CATG 1 cut(s) 132
FaiI YATR 5 cut(s) 93, 130, 260, 356, 374
FalI AAGNNNNNCTT 3 cut(s) 360, 392, 434
FatI CATG 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 72, 327, 391
Fsp4HI GCNGC 3 cut(s) 72, 327, 391
FspBI CTAG 1 cut(s) 454
GluI GCNGC 3 cut(s) 72, 327, 391
GsaI CCCAGC 1 cut(s) 293
HaeIII GGCC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 132
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HpaI GTTAAC 1 cut(s) 301
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 83, 208
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 2 cut(s) 5, 136
HpyCH4V TGCA 4 cut(s) 326, 390, 399, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 5, 136
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 22, 293
LguI GCTCTTC 1 cut(s) 407
LpnPI CCDG 5 cut(s) 112, 142, 155, 275, 327
Lsp1109I GCAGC 3 cut(s) 58, 338, 402
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 454
MaeII ACGT 2 cut(s) 5, 136
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 24, 295
MboI GATC 2 cut(s) 22, 293
MboII GAAGA 4 cut(s) 155, 421, 424, 442
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 3 cut(s) 17, 102, 152
MmeI TCCRAC 2 cut(s) 61, 386
MseI TTAA 6 cut(s) 12, 176, 228, 251, 300, 335
Mva1269I GAATGC 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 396
NdeII GATC 2 cut(s) 22, 293
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 407
PctI GAATGC 1 cut(s) 328
PkrI GCNGC 3 cut(s) 73, 328, 392
PmaCI CACGTG 1 cut(s) 137
PmlI CACGTG 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 137
PspCI CACGTG 1 cut(s) 137
PspFI CCCAGC 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 6 cut(s) 12, 176, 228, 251, 300, 335
SatI GCNGC 3 cut(s) 72, 327, 391
Sau3AI GATC 2 cut(s) 22, 293
SduI GDGCHC 1 cut(s) 38
SetI ASST 8 cut(s) 8, 81, 139, 182, 213, 257, 285, 331
SfaNI GCATC 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 3 cut(s) 17, 102, 152
SsiI CCGC 1 cut(s) 149
SspMI CTAG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 2 cut(s) 8, 139
TaqI TCGA 1 cut(s) 220
TasI AATT 3 cut(s) 17, 102, 152
Tru1I TTAA 6 cut(s) 12, 176, 228, 251, 300, 335
Tru9I TTAA 6 cut(s) 12, 176, 228, 251, 300, 335
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 3 cut(s) 71, 326, 390
Tsp45I GTSAC 1 cut(s) 268
TspRI CASTG 1 cut(s) 279
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 132
XspI CTAG 1 cut(s) 454
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.