Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004009

Physical Location & Seq

Genomic Coordinates Reverse (-)

38069861 .. 38074716

Gene Structure 4856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1249100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGGGGATAGATCTTGAACGGCCTTCGGGAGAATGCCGTAAGGAAGGTATTAGAGACCATGCCATTGTGAAAGCAACTAATGGTCCTGCAAATGATAAGGAGGATACAGGACAAAATGAAAACAAGGCGGTTGCCAGAGACGAAATTAATTTGAATTCTACAAAAGATTTAGAACCTCATGATGGAATGGAGTTTGAATCAAAGGAAGCTGCATTTTCGTTCTATAGAGAATATGCCAAGTCTGTGGGGTTCGCTGCTGTAATAAAGGCCAGTCGTCGATCAAGAGTATCTGGAAAGTTTATTGATGCAAAATTTGCATGCACTAGACATGGGAGCAAACGAGAATCTAATACAGCTGAAGCACCAGAGTCTGTTTCAAACCCCAGAGAATCTAGTATCTGTGACTCTGTTAAGAGAAAACGAGGTCGCTCTAACCGATCTTGGGAGAAAACAGATTGTAAAGCCTCCATGCATGTTAAGAGGCAAGATGGTAGATGGATTATTCGTAGTTTCATAAAAGAGCATAATCATGAAATTTTTCCTGATGAAGCCTATTATTTTAGGGGGCATAGGGATTTAGATCTAGGTAGATGTGATGTTGATCGCTTACTTGCTATCCGGAGAAGAACAAAGAAGATGTATGTTGATATGGCCAAACAGTCCGGTGGCTTCAAGAAGTTAGATAATCAAAAAGGTGGTGGGACAAATCAATCACTGAGCAGGAAGCATTTATCTTTAGAGGAAGGAGATGCTCAAGTTATGCTTGACCATTTTCTGTATATGCAAGATGAGAATCCTAACTTCTTTTATGCAGTTGATCTGAATGAGGAGCAGCGTTTGAAGAATGTTTTCTGGGTTGATGCCAAAGGTAGACTTGATTATGGGAATTTTAGTGATGTAGTATTTCTTGATACTGCATATATCAAGAATGAATACAAATTGCCGTTTGTTCCCTTTATTGGCGTGAACCACCACTTTCAGTTCATTTTGCTTGGATGTGCTTTACTAGCTGATGAGAGCAAATCATCCTATGTCTGGCTGATACGGGCATGGCTAAAAGCAATGGGTGGACGTGCTCCAAGAGTAATACTTAGTAGCCGAGATAAAGTCCTGAAAGAAGTGATTACAGAGGTCCTTCCTGATTCTCGTCATTGTTTTTGTTTGTGGCACATATTTGGCAAGATTCCTGATAAGCTTGGTTATGTGATTAGGCAACATGAAAAATTTATGGTTAAGTTTAACAAATGCGTTTTTAAGTCTTGGACAAATGAACAGTTTGAAAAAAGATGGTGGAAAATGGTTGACAGATTCAATTTAAGGGATGACGCATGGTTTCAATCATTGTATGAGGATCGTGGACGATGGATACCAACATACATGAGAGACACTTTTCTGGCAGGTATGTCTACAACCCAGCGGTTAGAAGGTATAAATTGTTTCTTCGACAAATTCATGCAGAGGAAAACTCCGTTGAAAGAATTTTTAGAACAATACAAAACAATCCTTCGAGAGAGGTATGAAGAGGAAGTAAAAGCTGATTTTGAAACATGGCATAAGCAACCAGCATTGAGATCTCCATCACCATATGGTAAACAAATGGCAACTGTGTATACTCATGCAGTATTTAAGAAATTCCAAGTTGAGGTTTTGGGAGTAGTTGCTTGTCATCCAAAGAAAGAAACTGAAGACGGATTAATCAAAACTTTCAGAGTTCAAGATTTTGTAGAGAATCAAGATTTCATTGTGGAGTGGAACGAAACGACATCGGATGTATCCTGTTTATGCCGTTCATTTGAATTCAAAGGTTTTCTTTGTAGACATGTGTTGATTGTACTGCAAATGTCTGGTGTACACAGTATTCCATCTCAGTATATATTAAAACGTTGGACGAAAGATGCAAAGAATAGGCAAACAACCAGAGAAGGGTCTGATGCAGCCGAATCTAGAGTTCAACGTTACAATGATCTATGCCGACGAGCCTTTAAATTGAGTGATGAAGGTTCTTTATCCCAAGAAAGTTACAGTATTGCGTTTAATGCATTGGAAGAAGCTCTGAGAAGTTGTGAGAGTATAAATAACTCAATCCAGAATGTAACAGAGCCAATCTCGCCAAAGACTCATGGTCCTCAAGGTTCCGAAGGAGAGAACCAAGGCAACAACAATATCGAGACTAATAAAAAAAATGGTGCATCCAAGAAAGGACAGGTGCATTCGGAGCCAGAGGCCATAAGCATTGGGATGCAAGAAAACTGGCAACAAGTGGCAGAACTCACCTCAAGAGCTCCAAACTTCGATGGTTATTATGGCAGTCAACAAATTGTTCAAGGAATGGGGCAGCTTAACACGATACCCTCCAGCCGTGAAGAATATCATAGCAATCAGCATATGCCAAGGCCGTGTCTAATAAACTCAATCGCGCCCATCCATGATTCTCACTACATGACTCAGCAAAGACTGCATGGGGTGGCGCAGTTGCATTTCAGACCACAACCTATTCCGAGTTATTTTGACATTCAGGATGGTTTGCAAGATGTGGACCAGTCTACTGTGGGAACCAATCAACCACATGGCTTGTCATCAAAACATTTGCATTCTAAACACCCGTCTCATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

872

Amino Acids

100.57

Weight (kDa)

8.65

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	73 - 181	1.1e-22	FAR1 DNA-binding domain
MULE	PF10551	300 - 392	9.3e-25	MULE transposase domain
SWIM	PF04434	590 - 614	8.6e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990
fragaria_vesca	FvH4_3g12634 FvH4_3g12634 FvH4_3g12634 FvH4_3g12634
malus_domestica	MD05G1249100.v1.1
prunus_persica	Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1
pyrus_communis	pycom05g22600
rosa_chinensis	RchiOBHm_Chr5g0020601
rosa_laevigata	RLG00000032542
rosa_multiflora	Rmu_sc0005607.1_g000012
rosa_roxburghii	Rroxscaffold_1G00057690
rosa_rugosa	Rorug05G0061500 Rorug05G0061600 Rorug05G0061600 Rorug05G0061600 Rorug05G0061600
rosa_samantha	Rh5AG151500 Rh5BG151100 Rh5CG162500 Rh5DG150400
rosa_wichuraiana	Rw5G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1388
AccI	GTMKAC	5 cut(s)	871, 1406, 1610, 1816, 2543
AccII	CGCG	1 cut(s)	2417
AccIII	TCCGGA	1 cut(s)	618
AciI	CCGC	2 cut(s)	128, 1417
AclI	AACGTT	2 cut(s)	1882, 1954
AclWI	GGATC	1 cut(s)	1359
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	9 cut(s)	154, 311, 534, 886, 1223, 1448, 1478, 1631, 1796
AcuI	CTGAAG	2 cut(s)	378, 1704
AfaI	GTAC	2 cut(s)	1833, 1851
AfiI	CCNNNNNNNGG	6 cut(s)	182, 442, 959, 1035, 1642, 1923
AflIII	ACRYGT	1 cut(s)	1819
AhdI	GACNNNNNGTC	1 cut(s)	2121
AjiI	CACGTC	1 cut(s)	1073
AluBI	AGCT	8 cut(s)	209, 356, 1010, 1195, 1535, 2051, 2282, 2338
AluI	AGCT	8 cut(s)	209, 356, 1010, 1195, 1535, 2051, 2282, 2338
Alw21I	GWGCWC	2 cut(s)	1078, 2284
Alw26I	GTCTC	5 cut(s)	48, 132, 1377, 2162, 2610
AlwI	GGATC	1 cut(s)	1359
AlwNI	CAGNNNCTG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	618
AoxI	GGCC	5 cut(s)	20, 267, 651, 2223, 2393
ApeKI	GCWGC	5 cut(s)	209, 254, 832, 1934, 2335
ApoI	RAATTY	9 cut(s)	154, 311, 534, 886, 1223, 1448, 1478, 1631, 1796
AseI	ATTAAT	2 cut(s)	147, 1694
Asp700I	GAANNNNTTC	2 cut(s)	537, 848
AspLEI	GCGC	2 cut(s)	2419, 2470
AspS9I	GGNCC	4 cut(s)	83, 1132, 2123, 2536
AsuHPI	GGTGA	2 cut(s)	1572, 2263
AvaII	GGWCC	4 cut(s)	83, 1132, 2123, 2536
BalI	TGGCCA	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	2284
BbsI	GAAGAC	1 cut(s)	1692
Bbv12I	GWGCWC	2 cut(s)	1078, 2284
BbvI	GCAGC	5 cut(s)	196, 241, 844, 1946, 2347
BceAI	ACGGC	6 cut(s)	21, 35, 928, 1770, 2343, 2380
BciVI	GTATCC	3 cut(s)	97, 1359, 1783
BcoDI	GTCTC	5 cut(s)	48, 132, 1377, 2162, 2610
BfaI	CTAG	5 cut(s)	324, 393, 584, 1007, 1944
BfmI	CTRYAG	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	1388
BfuI	GTATCC	3 cut(s)	97, 1359, 1783
BglII	AGATCT	3 cut(s)	10, 580, 1571
BisI	GCNGC	5 cut(s)	210, 255, 833, 1935, 2336
BlsI	GCNGC	5 cut(s)	211, 256, 834, 1936, 2337
Bme18I	GGWCC	4 cut(s)	83, 1132, 2123, 2536
BmeRI	GACNNNNNGTC	1 cut(s)	2121
BmgBI	CACGTC	1 cut(s)	1073
BmgT120I	GGNCC	4 cut(s)	83, 1132, 2123, 2536
BmiI	GGNNCC	3 cut(s)	2134, 2217, 2554
BmsI	GCATC	7 cut(s)	295, 739, 850, 1885, 1921, 2198, 2229
BpiI	GAAGAC	1 cut(s)	1692
BplI	GAGNNNNNCTC	4 cut(s)	1450, 1482, 2090, 2122
BpmI	CTGGAG	1 cut(s)	2338
BpuEI	CTTGAG	3 cut(s)	738, 2112, 2260
BsaBI	GATNNNNATC	4 cut(s)	579, 600, 792, 1576
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	2149, 2390
BsaWI	WCCGGW	2 cut(s)	618, 662
Bsc4I	CCNNNNNNNGG	6 cut(s)	182, 442, 959, 1035, 1642, 1923
Bse1I	ACTGG	3 cut(s)	270, 2255, 2539
Bse3DI	GCAATG	1 cut(s)	1068
Bse8I	GATNNNNATC	4 cut(s)	579, 600, 792, 1576
BseAI	TCCGGA	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	2149, 2390
BseGI	GGATG	9 cut(s)	1001, 1025, 1327, 1666, 1774, 2189, 2244, 2421, 2524
BseJI	GATNNNNATC	4 cut(s)	579, 600, 792, 1576
BseLI	CCNNNNNNNGG	6 cut(s)	182, 442, 959, 1035, 1642, 1923
BseMI	GCAATG	1 cut(s)	1068
BseMII	CTCAG	4 cut(s)	707, 1880, 2045, 2459
BseNI	ACTGG	3 cut(s)	270, 2255, 2539
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	5 cut(s)	196, 241, 844, 1946, 2347
BseYI	CCCAGC	1 cut(s)	1413
Bsh1236I	CGCG	1 cut(s)	2417
BshFI	GGCC	5 cut(s)	22, 269, 653, 2225, 2395
BsiHKAI	GWGCWC	2 cut(s)	1078, 2284
BsiSI	CCGG	2 cut(s)	619, 663
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	6 cut(s)	182, 442, 959, 1035, 1642, 1923
BsmAI	GTCTC	5 cut(s)	48, 132, 1377, 2162, 2610
BsmBI	CGTCTC	2 cut(s)	132, 2610
BsmFI	GGGAC	1 cut(s)	715
BsmI	GAATGC	3 cut(s)	38, 2209, 2590
BsnI	GGCC	5 cut(s)	22, 269, 653, 2225, 2395
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	1078, 2284
Bsp13I	TCCGGA	1 cut(s)	618
Bsp1407I	TGTACA	1 cut(s)	1849
Bsp143I	GATC	9 cut(s)	10, 278, 437, 580, 601, 817, 1351, 1571, 1963
BspACI	CCGC	2 cut(s)	128, 1417
BspANI	GGCC	5 cut(s)	22, 269, 653, 2225, 2395
BspCNI	CTCAG	4 cut(s)	708, 1879, 2046, 2458
BspEI	TCCGGA	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	2417
BspHI	TCATGA	2 cut(s)	178, 529
BspLI	GGNNCC	3 cut(s)	2134, 2217, 2554
BspMI	ACCTGC	1 cut(s)	1388
BspPI	GGATC	1 cut(s)	1359
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	1068
BsrGI	TGTACA	1 cut(s)	1849
BsrI	ACTGG	3 cut(s)	270, 2255, 2539
BssECI	CCNNGG	2 cut(s)	2149, 2390
BssMI	GATC	9 cut(s)	10, 278, 437, 580, 601, 817, 1351, 1571, 1963
BssNAI	GTATAC	1 cut(s)	1611
BssT1I	CCWWGG	2 cut(s)	2149, 2390
Bst1107I	GTATAC	1 cut(s)	1611
Bst4CI	ACNGT	6 cut(s)	660, 1275, 1606, 1856, 2024, 2548
Bst6I	CTCTTC	1 cut(s)	1515
BstAPI	GCANNNNNTGC	2 cut(s)	314, 2455
BstAUI	TGTACA	1 cut(s)	1849
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	5 cut(s)	716, 1091, 1866, 2054, 2445
BstF5I	GGATG	9 cut(s)	1001, 1025, 1327, 1666, 1774, 2189, 2244, 2421, 2524
BstFNI	CGCG	1 cut(s)	2417
BstHHI	GCGC	2 cut(s)	2419, 2470
BstKTI	GATC	9 cut(s)	13, 281, 440, 583, 604, 820, 1354, 1574, 1966
BstMAI	GTCTC	5 cut(s)	48, 132, 1377, 2162, 2610
BstMBI	GATC	9 cut(s)	10, 278, 437, 580, 601, 817, 1351, 1571, 1963
BstMWI	GCNNNNNNNGC	6 cut(s)	314, 1007, 2036, 2107, 2215, 2455
BstNSI	RCATGY	3 cut(s)	321, 476, 1823
BstSFI	CTRYAG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	2417
BstV1I	GCAGC	5 cut(s)	196, 241, 844, 1946, 2347
BstV2I	GAAGAC	1 cut(s)	1692
BstX2I	RGATCY	3 cut(s)	10, 580, 1571
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	3 cut(s)	10, 580, 1571
BstZ17I	GTATAC	1 cut(s)	1611
BsuI	GTATCC	3 cut(s)	97, 1359, 1783
BsuRI	GGCC	5 cut(s)	22, 269, 653, 2225, 2395
BtrI	CACGTC	1 cut(s)	1073
BtsCI	GGATG	9 cut(s)	1001, 1025, 1327, 1666, 1774, 2189, 2244, 2421, 2524
BtsIMutI	CAGTG	1 cut(s)	713
BveI	ACCTGC	1 cut(s)	1388
Cac8I	GCNNGC	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	2 cut(s)	178, 529
CfoI	GCGC	2 cut(s)	2419, 2470
Cfr13I	GGNCC	4 cut(s)	83, 1132, 2123, 2536
CseI	GACGC	1 cut(s)	1334
Csp6I	GTAC	2 cut(s)	1832, 1850
CspCI	CAANNNNNGTGG	2 cut(s)	2553, 2588
CviQI	GTAC	2 cut(s)	1832, 1850
DdeI	CTNAG	5 cut(s)	716, 1091, 1866, 2054, 2445
DpnI	GATC	9 cut(s)	12, 280, 439, 582, 603, 819, 1353, 1573, 1965
DpnII	GATC	9 cut(s)	10, 278, 437, 580, 601, 817, 1351, 1571, 1963
DraI	TTTAAA	1 cut(s)	1984
DriI	GACNNNNNGTC	1 cut(s)	2121
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	1515
Eam1105I	GACNNNNNGTC	1 cut(s)	2121
EarI	CTCTTC	1 cut(s)	1515
Ecl136II	GAGCTC	1 cut(s)	2282
Eco130I	CCWWGG	2 cut(s)	2149, 2390
Eco24I	GRGCYC	1 cut(s)	2284
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	4 cut(s)	83, 1132, 2123, 2536
Eco53kI	GAGCTC	1 cut(s)	2282
Eco57I	CTGAAG	2 cut(s)	378, 1704
EcoICRI	GAGCTC	1 cut(s)	2282
EcoO109I	RGGNCCY	1 cut(s)	1132
EcoRI	GAATTC	2 cut(s)	154, 1796
EcoT14I	CCWWGG	2 cut(s)	2149, 2390
EcoT22I	ATGCAT	2 cut(s)	474, 2041
EcoT38I	GRGCYC	1 cut(s)	2284
ErhI	CCWWGG	2 cut(s)	2149, 2390
Esp3I	CGTCTC	2 cut(s)	132, 2610
FalI	AAGNNNNNCTT	6 cut(s)	747, 779, 858, 890, 1794, 1826
FaqI	GGGAC	1 cut(s)	715
FauNDI	CATATG	2 cut(s)	1585, 2385
FblI	GTMKAC	5 cut(s)	871, 1406, 1610, 1816, 2543
Fnu4HI	GCNGC	5 cut(s)	210, 255, 833, 1935, 2336
FokI	GGATG	9 cut(s)	1008, 1012, 1334, 1653, 1781, 2176, 2251, 2408, 2531
FriOI	GRGCYC	1 cut(s)	2284
Fsp4HI	GCNGC	5 cut(s)	210, 255, 833, 1935, 2336
FspBI	CTAG	5 cut(s)	324, 393, 584, 1007, 1944
GlaI	GCGC	2 cut(s)	2418, 2469
GluI	GCNGC	5 cut(s)	210, 255, 833, 1935, 2336
GsaI	CCCAGC	1 cut(s)	1417
GsuI	CTGGAG	1 cut(s)	2338
HaeIII	GGCC	5 cut(s)	22, 269, 653, 2225, 2395
HapII	CCGG	2 cut(s)	619, 663
HgaI	GACGC	1 cut(s)	1334
HhaI	GCGC	2 cut(s)	2419, 2470
Hin6I	GCGC	2 cut(s)	2417, 2468
HinP1I	GCGC	2 cut(s)	2417, 2468
HincII	GTYRAC	2 cut(s)	1303, 2312
HindII	GTYRAC	2 cut(s)	1303, 2312
HindIII	AAGCTT	1 cut(s)	1193
HpaII	CCGG	2 cut(s)	619, 663
HphI	GGTGA	2 cut(s)	1572, 2263
Hpy188I	TCNGA	9 cut(s)	822, 1709, 1768, 1930, 2055, 2137, 2215, 2483, 2499
Hpy99I	CGWCG	2 cut(s)	279, 1977
HpyAV	CCTTC	9 cut(s)	33, 38, 737, 1145, 1418, 1514, 1916, 1991, 2132
HpyCH4III	ACNGT	6 cut(s)	660, 1275, 1606, 1856, 2024, 2548
HpyCH4IV	ACGT	3 cut(s)	1072, 1882, 1954
HpyF10VI	GCNNNNNNNGC	6 cut(s)	314, 1007, 2036, 2107, 2215, 2455
HpyF3I	CTNAG	5 cut(s)	716, 1091, 1866, 2054, 2445
HpySE526I	ACGT	3 cut(s)	1072, 1882, 1954
HspAI	GCGC	2 cut(s)	2417, 2468
Kpn2I	TCCGGA	1 cut(s)	618
Kzo9I	GATC	9 cut(s)	10, 278, 437, 580, 601, 817, 1351, 1571, 1963
LmnI	GCTCC	5 cut(s)	333, 829, 1081, 2215, 2287
Lsp1109I	GCAGC	5 cut(s)	196, 241, 844, 1946, 2347
LweI	GCATC	7 cut(s)	295, 739, 850, 1885, 1921, 2198, 2229
MaeI	CTAG	5 cut(s)	324, 393, 584, 1007, 1944
MaeII	ACGT	3 cut(s)	1072, 1882, 1954
MaeIII	GTNAC	4 cut(s)	401, 1955, 2018, 2092
MalI	GATC	9 cut(s)	12, 280, 439, 582, 603, 819, 1353, 1573, 1965
MboI	GATC	9 cut(s)	10, 278, 437, 580, 601, 817, 1351, 1571, 1963
MboII	GAAGA	8 cut(s)	636, 646, 853, 1432, 1532, 1697, 2057, 2375
MflI	RGATCY	3 cut(s)	10, 580, 1571
MhlI	GDGCHC	2 cut(s)	1078, 2284
MlsI	TGGCCA	1 cut(s)	653
MluNI	TGGCCA	1 cut(s)	653
MlyI	GAGTC	4 cut(s)	377, 398, 2110, 2437
MmeI	TCCRAC	1 cut(s)	1865
Mox20I	TGGCCA	1 cut(s)	653
Mph1103I	ATGCAT	2 cut(s)	474, 2041
MroI	TCCGGA	1 cut(s)	618
MroXI	GAANNNNTTC	2 cut(s)	537, 848
MscI	TGGCCA	1 cut(s)	653
MslI	CAYNNNNRTG	2 cut(s)	528, 2237
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	2 cut(s)	356, 1417
MspI	CCGG	2 cut(s)	619, 663
Mva1269I	GAATGC	3 cut(s)	38, 2209, 2590
MvnI	CGCG	1 cut(s)	2417
MwoI	GCNNNNNNNGC	6 cut(s)	314, 1007, 2036, 2107, 2215, 2455
NdeI	CATATG	2 cut(s)	1585, 2385
NdeII	GATC	9 cut(s)	10, 278, 437, 580, 601, 817, 1351, 1571, 1963
NlaIV	GGNNCC	3 cut(s)	2134, 2217, 2554
NmeAIII	GCCGAG	1 cut(s)	1124
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	2 cut(s)	474, 2041
NspI	RCATGY	3 cut(s)	321, 476, 1823
PaeI	GCATGC	1 cut(s)	321
PagI	TCATGA	2 cut(s)	178, 529
PciI	ACATGT	1 cut(s)	1819
PcsI	WCGNNNNNNNCGW	1 cut(s)	433
PctI	GAATGC	3 cut(s)	38, 2209, 2590
PdmI	GAANNNNTTC	2 cut(s)	537, 848
PkrI	GCNGC	5 cut(s)	211, 256, 834, 1936, 2337
PleI	GAGTC	4 cut(s)	376, 398, 2110, 2437
PpsI	GAGTC	4 cut(s)	376, 398, 2110, 2437
PpuMI	RGGWCCY	1 cut(s)	1132
PscI	ACATGT	1 cut(s)	1819
PshBI	ATTAAT	2 cut(s)	147, 1694
Psp124BI	GAGCTC	1 cut(s)	2284
Psp1406I	AACGTT	2 cut(s)	1882, 1954
Psp5II	RGGWCCY	1 cut(s)	1132
PspFI	CCCAGC	1 cut(s)	1413
PspN4I	GGNNCC	3 cut(s)	2134, 2217, 2554
PspPI	GGNCC	4 cut(s)	83, 1132, 2123, 2536
PspPPI	RGGWCCY	1 cut(s)	1132
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	3 cut(s)	10, 580, 1571
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	1833, 1851
RsaNI	GTAC	2 cut(s)	1832, 1850
RseI	CAYNNNNRTG	2 cut(s)	528, 2237
SacI	GAGCTC	1 cut(s)	2284
SatI	GCNGC	5 cut(s)	210, 255, 833, 1935, 2336
Sau3AI	GATC	9 cut(s)	10, 278, 437, 580, 601, 817, 1351, 1571, 1963
Sau96I	GGNCC	4 cut(s)	83, 1132, 2123, 2536
SchI	GAGTC	4 cut(s)	377, 398, 2110, 2437
SduI	GDGCHC	2 cut(s)	1078, 2284
SfaNI	GCATC	7 cut(s)	295, 739, 850, 1885, 1921, 2198, 2229
SfcI	CTRYAG	1 cut(s)	223
SinI	GGWCC	4 cut(s)	83, 1132, 2123, 2536
SmiMI	CAYNNNNRTG	2 cut(s)	528, 2237
SmlI	CTYRAG	3 cut(s)	753, 2127, 2275
SmoI	CTYRAG	3 cut(s)	753, 2127, 2275
SphI	GCATGC	1 cut(s)	321
SsiI	CCGC	2 cut(s)	128, 1417
SspMI	CTAG	5 cut(s)	324, 393, 584, 1007, 1944
SstI	GAGCTC	1 cut(s)	2284
StyI	CCWWGG	2 cut(s)	2149, 2390
TaaI	ACNGT	6 cut(s)	660, 1275, 1606, 1856, 2024, 2548
TaiI	ACGT	3 cut(s)	1075, 1885, 1957
TaqI	TCGA	5 cut(s)	277, 1443, 1507, 2166, 2292
TatI	WGTACW	2 cut(s)	1831, 1849
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	5 cut(s)	209, 254, 832, 1934, 2335
Tsp45I	GTSAC	1 cut(s)	401
TspGWI	ACGGA	2 cut(s)	1458, 1704
TspRI	CASTG	1 cut(s)	720
VpaK11BI	GGWCC	4 cut(s)	83, 1132, 2123, 2536
VspI	ATTAAT	2 cut(s)	147, 1694
XapI	RAATTY	9 cut(s)	154, 311, 534, 886, 1223, 1448, 1478, 1631, 1796
XbaI	TCTAGA	1 cut(s)	1943
XceI	RCATGY	3 cut(s)	321, 476, 1823
XmiI	GTMKAC	5 cut(s)	871, 1406, 1610, 1816, 2543
XmnI	GAANNNNTTC	2 cut(s)	537, 848
XspI	CTAG	5 cut(s)	324, 393, 584, 1007, 1944
Zsp2I	ATGCAT	2 cut(s)	474, 2041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.