Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004009

Physical Location & Seq

Genomic Coordinates Forward (+)

15414052 .. 15419017

Gene Structure 4966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG151100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGAGGATTGATCTTGAACAGCCTTCGGGAGAATCCCACAAGGCAGATAATGGACCTAGTGGCAGAGAGGAAGATACTTCTGGAGATCGAGCCATTGTAAGTGTAACTAATGTTCCTGTAAATGACAAGGAGAATACAGGAAAAAATGTGAATGGAAGTGTGTCAAATTCCAAAAACAGGGTAGATGCCAGAGATGAAATCAACTTGAATGCTCCGAAAGATTTAGAGCTTCATGACGGATTGGAGTTTGAATCAAAGGAAGAAGCTTTTTCCTTCTATAAAGAATATGCCAAGTCTATGGGGTTCGCTGCAGTAATTAAGGCTAGTCGACGGTCCAGAGCATCTGGAAAATTTATTGATGCAAAATTTGGATGCAGTAGATATGGGACCAAACCAGAAACTAGTAAAGCTCAAACTGCAGGGCCTGTTTCATATTCCAGAGAATCAAGTATCTGTCTTAAGAGAAAACGAGGAGGTCGTGCTAGCCGATCTTTGGAAAAAACAGATTGCAAAGCCTGCATGCATGTTAAGAGAAGGCAAGATGGTAGATGGACTGTTTGTACTCTCATTAAAGAGCACAATCATGAAATTTTCCCTGATGAAGCCTATTTTTTTCGAGGGCACAGGAAGTTAGATTTAAGTAGTGGTAATGTTGGTGGTAATGTTGATGGCATACACGCTATCCGGAGAAGAACAAAGAATATGTTTGCCAATATGTCCAGACATTCTGGAGGGTACAAGAAGTCCGGTAATCAAAAGGGTGGTGGGAAAAATCAGTCACCAAGCTTACAACATTTGTCTTTAGAGGAAGGAGATGCTCAAGTCATGCTTGACCATTTTCTGTGTATGCAAGATGAGAATCCTAACTTCTTCTATGCAATTGATCTGAATGAAGAGCAGCGATTGAGAAATGTCTTCTGGGTTGATGCCAAAGGTAGACTTGATTACGGAAATTTTAGTGATGTAGTATTTCTTGATACCACATATATCAAGAATGAATATAAATTGCCATTTGCTCCCTTTATTGGTGTGAACCACCATCTTCAGTTCATTTTGCTTGGATGTGCTTTACTTGCTGATGAGAGTAAATCAACCTATGTCTGGCTGATGCGGGCATGGCTAAAAGCAATGGGGGGACATGCTCCAAGAGTGATACTTACTGACCAGGACAAGTTCTTGAAAGAAGCTATTGCAGAGGTCTTTCCTGATAGTCGTCATTGTTTTTGTTTGTGGCACATATTGGGTAAGATTCATGAGAAGCTTGGTTATGTGATTAGGCAGCACGATCAATTTATGGAAAAATTTAACAAATGCATTTTCAAGTCTTGGACAAATGAACAGGTTGAAATAAGATGGTTCAAAATGGTTGATAGATTCAATTTAAGAAATGACATATGGTTGCAGTCATTGTATGAAGATCGTAGACAATGGATACCAGCATACTTGAGAGACATTTTCCTGGCAGGGATGTCTACAACCCAGCGATCAGAAAGTATAAACTGTTTCTTTGACAAATACATGCAAAGGAGAACTACATTGAAAGAGTTTTTTGAACAATACAATGCAATCCTCCGTGAGAAGTATGAAGAGGAAGCAAAAGCAGATTTTGAAACATGGCATAAACAACCAGCGTTGAAATCTCCATCGCCTTTTGGAAAACAAATGGCTACCATGTATACTCATGCAATATTTAAGAAATTCCAAGTTGAGGTGTTGGGAGTAGTTGCTTGTCACCCAAAGGAAGAAGCTGAAGATGGAGGAATCAAAACTTTTCGAGTTCAAGATTTTGAAGAGAATCAACATTTCATTGTGGAGTGGAATGAAATGACGTCAGATATATCCTGTTTGTGCCATTCATTTGAATTCAATGGTTTCCTTTGTAGACATGTGTTGATTGTGCTGCAAATATCTGGTGTACACAATATTCCATCTCAGTATATATTAAATCGTTGGACAAAAGATGCAAAGAGCAGGCAAACAAGGGGTGTAGGGTCGAGTTCGGTTGAGTCTAGAGTTCAACGTTACAATGATCTATGCCGACGTGCCTTTGAATTGGGTGATGAAGGTTCTTTATCCCAGGAAAGTTACAATATTGCATTTATGGCATTGGAAGAAGCTTTGAGAAATTGTGAGAATATAAATAACTCAATTCAGAGTGTAATAGAACCAGTGTCTCCAGAGACTCATGGTCCTCATAGCTTTGAAGGAATGAACCAAGCTAACAGCACTAACAAGACAAATAAAAAGAATTTTACATCCAAGAAAGGACAGGTACATTCAGAGCCAGAGGTCCTAACCATTGAGATGCAAGAGAGCTGGCAAGGAATGGAACAACTGAGCTCGAGAGCTCCCACCCTAGATGGTTACATTGGTCCTCAACAAATCGTTCAAGGAATGGGGCCGTTAAACACAGTTTCCTCAAGGCGTGATAATTATTATAGCAATCAGCATATGCAAGGGCCGGGGCAATTGAACCCAATCACACCCATCCAGGATGCTCAATACATAACTCAGCAAAGACTGCATGGAGTGGGGCATTTGCATTTCAGACCACAAACTATTCCAAGTTTTGTAATTGAAGATGATTTGCAAGATATGGATCAGTCCACTCTGGGACGCACTCAGATTCATGGCTTGGCATCAAACCATTTGCAGTCGAAACATCCCTCACGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

892

Amino Acids

102.23

Weight (kDa)

7.83

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	91 - 199	1.3e-24	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	290 - 405	3.7e-06	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	322 - 414	3.5e-29	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990
fragaria_vesca	FvH4_3g12634 FvH4_3g12634 FvH4_3g12634 FvH4_3g12634
malus_domestica	MD05G1249100.v1.1
prunus_persica	Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1
pyrus_communis	pycom05g22600
rosa_chinensis	RchiOBHm_Chr5g0020601
rosa_laevigata	RLG00000032542
rosa_multiflora	Rmu_sc0005607.1_g000012
rosa_roxburghii	Rroxscaffold_1G00057690
rosa_rugosa	Rorug05G0061500 Rorug05G0061600 Rorug05G0061600 Rorug05G0061600 Rorug05G0061600
rosa_samantha	Rh5AG151500 Rh5BG151100 Rh5CG162500 Rh5DG150400
rosa_wichuraiana	Rw5G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1832
AccI	GTMKAC	6 cut(s)	328, 937, 1423, 1472, 1676, 1882
AccIII	TCCGGA	1 cut(s)	684
AciI	CCGC	1 cut(s)	1111
AclI	AACGTT	1 cut(s)	2020
AclWI	GGATC	1 cut(s)	2607
AcsI	RAATTY	9 cut(s)	166, 350, 365, 588, 952, 1301, 1697, 1862, 2248
AcuI	CTGAAG	2 cut(s)	1028, 1770
AcyI	GRCGYC	1 cut(s)	1829
AfaI	GTAC	4 cut(s)	562, 737, 1917, 2274
AfiI	CCNNNNNNNGG	5 cut(s)	177, 493, 1025, 1101, 1708
AflII	CTTAAG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	1885
AhdI	GACNNNNNGTC	1 cut(s)	2187
AhlI	ACTAGT	1 cut(s)	401
AjiI	CACGTC	2 cut(s)	2042, 2672
AjnI	CCWGG	4 cut(s)	1164, 1458, 2076, 2490
Alw21I	GWGCWC	3 cut(s)	579, 2342, 2350
Alw26I	GTCTC	3 cut(s)	1443, 2174, 2178
AlwI	GGATC	1 cut(s)	2607
AlwNI	CAGNNNCTG	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	2341
Aor13HI	TCCGGA	1 cut(s)	684
AoxI	GGCC	3 cut(s)	422, 2399, 2459
ApeKI	GCWGC	4 cut(s)	308, 898, 1279, 1900
ApoI	RAATTY	9 cut(s)	166, 350, 365, 588, 952, 1301, 1697, 1862, 2248
AspS9I	GGNCC	9 cut(s)	53, 333, 387, 422, 2189, 2290, 2372, 2399, 2459
AsuC2I	CCSGG	1 cut(s)	2463
AsuHPI	GGTGA	3 cut(s)	771, 1724, 2069
AsuNHI	GCTAGC	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	2341
AvaII	GGWCC	6 cut(s)	53, 333, 387, 2189, 2290, 2372
BaeGI	GKGCMC	1 cut(s)	624
BanII	GRGCYC	2 cut(s)	2342, 2350
BbsI	GAAGAC	1 cut(s)	907
Bbv12I	GWGCWC	3 cut(s)	579, 2342, 2350
BbvI	GCAGC	4 cut(s)	295, 910, 1291, 1887
BceAI	ACGGC	1 cut(s)	2386
BciT130I	CCWGG	4 cut(s)	1166, 1460, 2078, 2492
BciVI	GTATCC	1 cut(s)	1425
BcnI	CCSGG	1 cut(s)	2463
BcoDI	GTCTC	3 cut(s)	1443, 2174, 2178
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	6 cut(s)	57, 324, 402, 483, 2010, 2357
BfmI	CTRYAG	2 cut(s)	309, 417
BfrI	CTTAAG	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	1425
BisI	GCNGC	4 cut(s)	309, 899, 1280, 1901
BlsI	GCNGC	4 cut(s)	310, 900, 1281, 1902
Bme1390I	CCNGG	5 cut(s)	1166, 1460, 2078, 2463, 2492
Bme18I	GGWCC	6 cut(s)	53, 333, 387, 2189, 2290, 2372
BmeRI	GACNNNNNGTC	1 cut(s)	2187
BmeT110I	CYCGRG	1 cut(s)	2341
BmgBI	CACGTC	2 cut(s)	2042, 2672
BmgT120I	GGNCC	9 cut(s)	53, 333, 387, 422, 2189, 2290, 2372, 2399, 2459
BmiI	GGNNCC	2 cut(s)	388, 2400
BmrFI	CCNGG	5 cut(s)	1166, 1460, 2078, 2463, 2492
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	907
BpmI	CTGGAG	3 cut(s)	102, 750, 2160
BpuEI	CTTGAG	3 cut(s)	804, 1465, 2404
BpuMI	CCSGG	1 cut(s)	2463
BsaBI	GATNNNNATC	2 cut(s)	858, 2598
BsaHI	GRCGYC	1 cut(s)	1829
BsaJI	CCNNGG	2 cut(s)	2076, 2462
BsaWI	WCCGGW	2 cut(s)	684, 746
Bsc4I	CCNNNNNNNGG	5 cut(s)	177, 493, 1025, 1101, 1708
Bse1I	ACTGG	1 cut(s)	2168
Bse3DI	GCAATG	1 cut(s)	1134
Bse8I	GATNNNNATC	2 cut(s)	858, 2598
BseAI	TCCGGA	1 cut(s)	684
BseBI	CCWGG	4 cut(s)	1166, 1460, 2078, 2492
BseDI	CCNNGG	2 cut(s)	2076, 2462
BseGI	GGATG	7 cut(s)	377, 1067, 1473, 2255, 2487, 2500, 2662
BseJI	GATNNNNATC	2 cut(s)	858, 2598
BseLI	CCNNNNNNNGG	5 cut(s)	177, 493, 1025, 1101, 1708
BseMI	GCAATG	1 cut(s)	1134
BseMII	CTCAG	4 cut(s)	1946, 2327, 2525, 2636
BseNI	ACTGG	1 cut(s)	2168
BseRI	GAGGAG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	4 cut(s)	295, 910, 1291, 1887
BseYI	CCCAGC	1 cut(s)	1479
BshFI	GGCC	3 cut(s)	424, 2401, 2461
BsiHKAI	GWGCWC	3 cut(s)	579, 2342, 2350
BsiHKCI	CYCGRG	1 cut(s)	2341
BsiSI	CCGG	3 cut(s)	685, 747, 2462
BslFI	GGGAC	3 cut(s)	400, 1149, 2628
BslI	CCNNNNNNNGG	5 cut(s)	177, 493, 1025, 1101, 1708
BsmAI	GTCTC	3 cut(s)	1443, 2174, 2178
BsmFI	GGGAC	3 cut(s)	400, 1149, 2628
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	424, 2401, 2461
BsoBI	CYCGRG	1 cut(s)	2341
Bsp1286I	GDGCHC	4 cut(s)	579, 624, 2342, 2350
Bsp13I	TCCGGA	1 cut(s)	684
Bsp1407I	TGTACA	1 cut(s)	1915
Bsp143I	GATC	9 cut(s)	10, 85, 488, 883, 1285, 1417, 1484, 2029, 2599
BspACI	CCGC	1 cut(s)	1111
BspANI	GGCC	3 cut(s)	424, 2401, 2461
BspCNI	CTCAG	4 cut(s)	1945, 2328, 2524, 2635
BspEI	TCCGGA	1 cut(s)	684
BspHI	TCATGA	3 cut(s)	232, 583, 1252
BspLI	GGNNCC	2 cut(s)	388, 2400
BspMAI	CTGCAG	2 cut(s)	313, 421
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	2607
BspQI	GCTCTTC	1 cut(s)	888
BspTI	CTTAAG	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	1134
BsrGI	TGTACA	1 cut(s)	1915
BsrI	ACTGG	1 cut(s)	2168
BssECI	CCNNGG	2 cut(s)	2076, 2462
BssMI	GATC	9 cut(s)	10, 85, 488, 883, 1285, 1417, 1484, 2029, 2599
BssNAI	GTATAC	1 cut(s)	1677
BssNI	GRCGYC	1 cut(s)	1829
Bst1107I	GTATAC	1 cut(s)	1677
Bst2UI	CCWGG	4 cut(s)	1166, 1460, 2078, 2492
Bst4CI	ACNGT	4 cut(s)	333, 556, 1502, 2413
Bst6I	CTCTTC	3 cut(s)	888, 1581, 1785
BstACI	GRCGYC	1 cut(s)	1829
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	2 cut(s)	516, 2521
BstAUI	TGTACA	1 cut(s)	1915
BstC8I	GCNNGC	6 cut(s)	484, 517, 521, 1113, 1973, 2318
BstDEI	CTNAG	4 cut(s)	1932, 2336, 2511, 2622
BstF5I	GGATG	7 cut(s)	377, 1067, 1473, 2255, 2487, 2500, 2662
BstKTI	GATC	9 cut(s)	13, 88, 491, 886, 1288, 1420, 1487, 2032, 2602
BstMAI	GTCTC	3 cut(s)	1443, 2174, 2178
BstMBI	GATC	9 cut(s)	10, 85, 488, 883, 1285, 1417, 1484, 2029, 2599
BstMWI	GCNNNNNNNGC	6 cut(s)	416, 516, 1073, 1117, 2102, 2521
BstNI	CCWGG	4 cut(s)	1166, 1460, 2078, 2492
BstNSI	RCATGY	5 cut(s)	523, 527, 1142, 1522, 1889
BstSCI	CCNGG	5 cut(s)	1164, 1458, 2076, 2461, 2490
BstSFI	CTRYAG	2 cut(s)	309, 417
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	4 cut(s)	295, 910, 1291, 1887
BstV2I	GAAGAC	1 cut(s)	907
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstZ17I	GTATAC	1 cut(s)	1677
BsuI	GTATCC	1 cut(s)	1425
BsuRI	GGCC	3 cut(s)	424, 2401, 2461
BtgZI	GCGATG	1 cut(s)	1629
BtrI	CACGTC	2 cut(s)	2042, 2672
BtsCI	GGATG	7 cut(s)	377, 1067, 1473, 2255, 2487, 2500, 2662
BtsIMutI	CAGTG	1 cut(s)	2175
Cac8I	GCNNGC	6 cut(s)	484, 517, 521, 1113, 1973, 2318
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	3 cut(s)	232, 583, 1252
Cfr13I	GGNCC	9 cut(s)	53, 333, 387, 422, 2189, 2290, 2372, 2399, 2459
CseI	GACGC	1 cut(s)	2625
Csp6I	GTAC	4 cut(s)	561, 736, 1916, 2273
CviQI	GTAC	4 cut(s)	561, 736, 1916, 2273
DdeI	CTNAG	4 cut(s)	1932, 2336, 2511, 2622
DpnI	GATC	9 cut(s)	12, 87, 490, 885, 1287, 1419, 1486, 2031, 2601
DpnII	GATC	9 cut(s)	10, 85, 488, 883, 1285, 1417, 1484, 2029, 2599
DriI	GACNNNNNGTC	1 cut(s)	2187
Eam1104I	CTCTTC	3 cut(s)	888, 1581, 1785
Eam1105I	GACNNNNNGTC	1 cut(s)	2187
EarI	CTCTTC	3 cut(s)	888, 1581, 1785
Ecl136II	GAGCTC	2 cut(s)	2340, 2348
Eco24I	GRGCYC	2 cut(s)	2342, 2350
Eco47I	GGWCC	6 cut(s)	53, 333, 387, 2189, 2290, 2372
Eco53kI	GAGCTC	2 cut(s)	2340, 2348
Eco57I	CTGAAG	2 cut(s)	1028, 1770
Eco88I	CYCGRG	1 cut(s)	2341
EcoICRI	GAGCTC	2 cut(s)	2340, 2348
EcoO109I	RGGNCCY	2 cut(s)	422, 2290
EcoRI	GAATTC	1 cut(s)	1862
EcoRII	CCWGG	4 cut(s)	1164, 1458, 2076, 2490
EcoT22I	ATGCAT	2 cut(s)	525, 1316
EcoT38I	GRGCYC	2 cut(s)	2342, 2350
FalI	AAGNNNNNCTT	4 cut(s)	813, 845, 924, 956
FaqI	GGGAC	3 cut(s)	400, 1149, 2628
FauI	CCCGC	1 cut(s)	1104
FauNDI	CATATG	2 cut(s)	1394, 2451
FblI	GTMKAC	6 cut(s)	328, 937, 1423, 1472, 1676, 1882
Fnu4HI	GCNGC	4 cut(s)	309, 899, 1280, 1901
FokI	GGATG	7 cut(s)	384, 1074, 1480, 2242, 2474, 2507, 2649
FriOI	GRGCYC	2 cut(s)	2342, 2350
Fsp4HI	GCNGC	4 cut(s)	309, 899, 1280, 1901
FspBI	CTAG	6 cut(s)	57, 324, 402, 483, 2010, 2357
GluI	GCNGC	4 cut(s)	309, 899, 1280, 1901
GsaI	CCCAGC	1 cut(s)	1483
GsuI	CTGGAG	3 cut(s)	102, 750, 2160
HaeIII	GGCC	3 cut(s)	424, 2401, 2461
HapII	CCGG	3 cut(s)	685, 747, 2462
HgaI	GACGC	1 cut(s)	2625
Hin1I	GRCGYC	1 cut(s)	1829
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HindIII	AAGCTT	4 cut(s)	264, 784, 1259, 2115
HpaII	CCGG	3 cut(s)	685, 747, 2462
HphI	GGTGA	3 cut(s)	771, 1724, 2069
Hpy188I	TCNGA	8 cut(s)	216, 888, 1489, 1834, 2154, 2281, 2549, 2625
Hpy99I	CGWCG	2 cut(s)	333, 2043
HpyAV	CCTTC	6 cut(s)	33, 283, 528, 803, 2057, 2198
HpyCH4III	ACNGT	4 cut(s)	333, 556, 1502, 2413
HpyCH4IV	ACGT	4 cut(s)	1829, 2020, 2041, 2671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	416, 516, 1073, 1117, 2102, 2521
HpyF3I	CTNAG	4 cut(s)	1932, 2336, 2511, 2622
HpySE526I	ACGT	4 cut(s)	1829, 2020, 2041, 2671
Hsp92I	GRCGYC	1 cut(s)	1829
Kpn2I	TCCGGA	1 cut(s)	684
Kzo9I	GATC	9 cut(s)	10, 85, 488, 883, 1285, 1417, 1484, 2029, 2599
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	4 cut(s)	217, 1021, 1147, 2353
Lsp1109I	GCAGC	4 cut(s)	295, 910, 1291, 1887
MaeI	CTAG	6 cut(s)	57, 324, 402, 483, 2010, 2357
MaeII	ACGT	4 cut(s)	1829, 2020, 2041, 2671
MaeIII	GTNAC	6 cut(s)	103, 777, 1730, 2021, 2084, 2363
MalI	GATC	9 cut(s)	12, 87, 490, 885, 1287, 1419, 1486, 2031, 2601
MboI	GATC	9 cut(s)	10, 85, 488, 883, 1285, 1417, 1484, 2029, 2599
MfeI	CAATTG	2 cut(s)	879, 2468
MhlI	GDGCHC	4 cut(s)	579, 624, 2342, 2350
MlyI	GAGTC	2 cut(s)	2015, 2176
MmeI	TCCRAC	1 cut(s)	1931
Mph1103I	ATGCAT	2 cut(s)	525, 1316
MroI	TCCGGA	1 cut(s)	684
MslI	CAYNNNNRTG	2 cut(s)	582, 2303
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	3 cut(s)	685, 747, 2462
MspR9I	CCNGG	5 cut(s)	1166, 1460, 2078, 2463, 2492
MunI	CAATTG	2 cut(s)	879, 2468
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	4 cut(s)	1166, 1460, 2078, 2492
MwoI	GCNNNNNNNGC	6 cut(s)	416, 516, 1073, 1117, 2102, 2521
NciI	CCSGG	1 cut(s)	2463
NdeI	CATATG	2 cut(s)	1394, 2451
NdeII	GATC	9 cut(s)	10, 85, 488, 883, 1285, 1417, 1484, 2029, 2599
NheI	GCTAGC	1 cut(s)	482
NlaIV	GGNNCC	2 cut(s)	388, 2400
NmuCI	GTSAC	2 cut(s)	777, 1730
NsiI	ATGCAT	2 cut(s)	525, 1316
NspI	RCATGY	5 cut(s)	523, 527, 1142, 1522, 1889
PaeI	GCATGC	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	2341
PagI	TCATGA	3 cut(s)	232, 583, 1252
PciI	ACATGT	1 cut(s)	1885
PciSI	GCTCTTC	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	2 cut(s)	475, 484
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	9 cut(s)	32, 251, 443, 859, 1249, 1374, 1761, 1795, 2626
PfoI	TCCNGGA	1 cut(s)	2490
PkrI	GCNGC	4 cut(s)	310, 900, 1281, 1902
PleI	GAGTC	2 cut(s)	2014, 2176
PpsI	GAGTC	2 cut(s)	2014, 2176
PpuMI	RGGWCCY	1 cut(s)	2290
PscI	ACATGT	1 cut(s)	1885
Psp124BI	GAGCTC	2 cut(s)	2342, 2350
Psp1406I	AACGTT	1 cut(s)	2020
Psp5II	RGGWCCY	1 cut(s)	2290
Psp6I	CCWGG	4 cut(s)	1164, 1458, 2076, 2490
PspFI	CCCAGC	1 cut(s)	1479
PspGI	CCWGG	4 cut(s)	1164, 1458, 2076, 2490
PspN4I	GGNNCC	2 cut(s)	388, 2400
PspPI	GGNCC	9 cut(s)	53, 333, 387, 422, 2189, 2290, 2372, 2399, 2459
PspPPI	RGGWCCY	1 cut(s)	2290
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PstI	CTGCAG	2 cut(s)	313, 421
PstNI	CAGNNNCTG	1 cut(s)	425
RsaI	GTAC	4 cut(s)	562, 737, 1917, 2274
RsaNI	GTAC	4 cut(s)	561, 736, 1916, 2273
RseI	CAYNNNNRTG	2 cut(s)	582, 2303
SacI	GAGCTC	2 cut(s)	2342, 2350
SalI	GTCGAC	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	888
SatI	GCNGC	4 cut(s)	309, 899, 1280, 1901
Sau3AI	GATC	9 cut(s)	10, 85, 488, 883, 1285, 1417, 1484, 2029, 2599
Sau96I	GGNCC	9 cut(s)	53, 333, 387, 422, 2189, 2290, 2372, 2399, 2459
SchI	GAGTC	2 cut(s)	2015, 2176
ScrFI	CCNGG	5 cut(s)	1166, 1460, 2078, 2463, 2492
SduI	GDGCHC	4 cut(s)	579, 624, 2342, 2350
SfcI	CTRYAG	2 cut(s)	309, 417
Sfr274I	CTCGAG	1 cut(s)	2341
SinI	GGWCC	6 cut(s)	53, 333, 387, 2189, 2290, 2372
SlaI	CTCGAG	1 cut(s)	2341
SmiMI	CAYNNNNRTG	2 cut(s)	582, 2303
SmlI	CTYRAG	5 cut(s)	458, 819, 1444, 2341, 2419
SmoI	CTYRAG	5 cut(s)	458, 819, 1444, 2341, 2419
SpeI	ACTAGT	1 cut(s)	401
SphI	GCATGC	1 cut(s)	523
SsiI	CCGC	1 cut(s)	1111
SspI	AATATT	3 cut(s)	1689, 1924, 2092
SspMI	CTAG	6 cut(s)	57, 324, 402, 483, 2010, 2357
SstI	GAGCTC	2 cut(s)	2342, 2350
StyD4I	CCNGG	5 cut(s)	1164, 1458, 2076, 2461, 2490
TaaI	ACNGT	4 cut(s)	333, 556, 1502, 2413
TaiI	ACGT	4 cut(s)	1832, 2023, 2044, 2674
TaqI	TCGA	7 cut(s)	88, 328, 616, 1774, 1994, 2342, 2657
TatI	WGTACW	2 cut(s)	560, 1915
TfiI	GAWTC	3 cut(s)	32, 251, 443
TscAI	CASTG	1 cut(s)	2175
TseFI	GTSAC	2 cut(s)	777, 1730
TseI	GCWGC	4 cut(s)	308, 898, 1279, 1900
Tsp45I	GTSAC	2 cut(s)	777, 1730
TspGWI	ACGGA	3 cut(s)	252, 963, 1562
TspRI	CASTG	1 cut(s)	2175
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	6 cut(s)	53, 333, 387, 2189, 2290, 2372
XapI	RAATTY	9 cut(s)	166, 350, 365, 588, 952, 1301, 1697, 1862, 2248
XbaI	TCTAGA	1 cut(s)	2009
XceI	RCATGY	5 cut(s)	523, 527, 1142, 1522, 1889
XhoI	CTCGAG	1 cut(s)	2341
XmiI	GTMKAC	6 cut(s)	328, 937, 1423, 1472, 1676, 1882
XspI	CTAG	6 cut(s)	57, 324, 402, 483, 2010, 2357
ZraI	GACGTC	1 cut(s)	1830
Zsp2I	ATGCAT	2 cut(s)	525, 1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.