Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004009

Physical Location & Seq

Genomic Coordinates Forward (+)

15891516 .. 15895055

Gene Structure 3540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG151500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGAGGATTGATCTTGAACAGCCTTCGGGAGAATCCCACAAGGCAGATAATGGACCTAGTGGCAGAGAGGAAGATACTTCTGGAGATCGAGCCATTGTAAGTGTAACTAATGTTCCTGTAAATGACAAGGAGAATACAGGAAAAAATGTGAATGGAAGTGTGTCAAATTCCAAAAACAGGGTAGATGCCAGGGATGAAATCAACTTGAATGCTCCGAAAGATTCAGAGCTTCATGACGGATTGGAGTTTGAATCAAAGGAAGAAGCTTTTTCCTTCTATAAAGAATATGCCAAGTCTATGGGGTTCGCTGCAGTAATTAAGGCTAGCCGACGGTCCAGAGCATCTGGAAAATTTATTGATGCAAAATTTGGATGCAGTAGATATGGGACCAAACCAGAAACTAGTAAAGCTCAAACTGCAGAGCCTGGTTCATATTCCAGAGAATCAAGTATCTGTCTTAAGAGAAAACGAGGAGGTCGTGCTAGCCGATCTTTGGAAAAAACAGATTGCAAAGCCTGCATGCATGTTAAGAGAAGGCAAGATGGTCGATGGACTGTTTGTACTCTCATTAAAGAGCACAATCATGAAATTTTCCCTGATGAAGCCTATTTTTTTCGAGGGCACAGGAAGTTAGATTTAAGTAGTGGTAATGTTGATGGCATACATGCTATCCGGAGAAGAACAAAGAATATGTTTGCCAATATGTCCAGACATTCTGGGGGGTACAAGAAATCCAGTAATCAAAAGGGTGGTGGGAAAAATCAGTCACCAAGCTTACAACATTTGTCTTTGGAGGAAGGAGATGCTCAAGTCATGCTTGACCATTTTCTGTGTATGCAAGATGAGAATCCTAACTTCTTCTATGCAATTGATCTGAATGAAGAGCAGCGATTGAGAAATGTCTTCTGGGTTGATGCCAAAGGTAGACTTGATTACGGAAATTTTAGTGATGTAGTATTTCTTGATACCACATATATCAAGAATGAATATAAATTGCCATTTGCTCCCTTTATTGGTGTGAACCACCATCTTCAGTTCATTTTGCTTGGATGTGCTTTACTTGCTGATGAGAGTAAATCAAACTATGTCTGGCTGATGCGGGCATGGCTAAAAGCAATGGGGGGACGTGCTCCAAGAGTGATACTTACTGACCAGGACAAGTTCTTGAAAGAAGCTATCGCAGAGGTCTTTCCTGATAGTCGTCATTGTTTTTGTTTGTGGCACATATTGGGTAAGATTCATGAGAAGCTTGGATATGTGATTAGGCAGCACGATCAATTTATGGAAAAATTTAACAAATGCATTTTCAAGTCTTGGACAAATGAACAGGTTGAAATAAGATGGTTCAAAATGGTTGATAGATTCAATTTAAGAAATGACATATGGTTGCAGTCATTGTATGAAGATCGTAGACAATGGATACCGGCATACTTGAGAGACATTTTCCTGGCAGGGATGTCTACAACTCAGCGATCAGAAAGTATAAACTGTTTCTTTGACAAATACATGCAAAGGAGAACTACATTGAAAGAGTTCTTTGAACAATACAATACAATCCTCCGTGAGAAGTATGAAGAGGAAGCAAAAGCAGATTTTGAAACATGGCATAAACAACCAGCGTTGAAATCTCCATCGCCTTTTGGAAAACAAATGGCTACCGTGTATACTCATGCAATATTTAAGAAATTCCAAGTTGAGGTGTTGGGAGTAGTTGCTTGTCACCCAAAGAAAGAAGCTGAAGATGGAGGAATCAAAACTTTTCGAGTTCAAGATTTTGAAGAGAATCAACATTTCATTGTGGAGTGGAATGAAATGACGTCAGATATGTCCTGTTTGTGCCATTCATTTGAATTCAATGGTTTCCTTTGTAGACATGTGTTGATTGTGCTGCAAATATCTGGTGTACACAATATTCCATCTCAGTATATATTAAAACGTTGGACAAAAGATGCAAAGAGCAGGGAAACAAGGGGTGTAGGGTCGAGTTCGGTTGAGTCTAGAGCTCAACGTTACAATGATCTATGCCGACGTGCCTTTGAATTGGGTGATGAAGGTTCTTTATCCCAGGAAAGTTACAATATTGCATTTATGGCATTGGAAGAAGCTTTGAGAAATTGTGAGAATATAAATAACTCAATTCAGAGTGTAATAGAACCAGTGTCTCCAGAGGCTCATGGTCCTCATAGCTTTGAAGGAATGAACCAAGGTAACAGCACTAACAAGACAAATAAAAAGAATATTACATCCAAGAAAGGACAGGTACATTCAGAGCCAGAGGTCCTAACCATTGAGATGCAAGAGAGCTGGCAAGGAATGGAACAACTGAGCTCGAGAGCTCCCACCCTAGATGGTTACATTGGTCCTCAACAAATCGTTCAAGGAATGGGGCCGTTAAACACAGTTTCCTCAAGGCGTGATAATTATTATAGCAATCAGCATATGCAAGGGCTGGGGCAATTGAACTCAATCACACCCATCCAGGATGCTCAATACATAACTCAGCAAAGACTGCATGGAGTGGGGCAGTTGCATTTCAGACCACGAACTATTCCAAGTTTTGTAATTGAAGATGATTTGCAAGATATGGATCAATCCACTGTGGGACGCACTCAGATTCATGGGTTGGCATCAAACCATTTGCAGTCGAAACATCCCTCTCGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

888

Amino Acids

101.9

Weight (kDa)

8.27

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	91 - 199	7.5e-24	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	286 - 401	2.1e-06	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	318 - 410	5.1e-29	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990 AT4G19990
fragaria_vesca	FvH4_3g12634 FvH4_3g12634 FvH4_3g12634 FvH4_3g12634
malus_domestica	MD05G1249100.v1.1
prunus_persica	Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1 Prupe.4G115100_v2.0.a1
pyrus_communis	pycom05g22600
rosa_chinensis	RchiOBHm_Chr5g0020601
rosa_laevigata	RLG00000032542
rosa_multiflora	Rmu_sc0005607.1_g000012
rosa_roxburghii	Rroxscaffold_1G00057690
rosa_rugosa	Rorug05G0061500 Rorug05G0061600 Rorug05G0061600 Rorug05G0061600 Rorug05G0061600
rosa_samantha	Rh5AG151500 Rh5BG151100 Rh5CG162500 Rh5DG150400
rosa_wichuraiana	Rw5G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1820
AccI	GTMKAC	5 cut(s)	925, 1411, 1460, 1664, 1870
AccIII	TCCGGA	1 cut(s)	672
AciI	CCGC	1 cut(s)	1099
AclI	AACGTT	2 cut(s)	1936, 2008
AclWI	GGATC	1 cut(s)	2595
AcsI	RAATTY	8 cut(s)	166, 350, 365, 588, 940, 1289, 1685, 1850
AcuI	CTGAAG	2 cut(s)	1016, 1758
AcyI	GRCGYC	1 cut(s)	1817
AfaI	GTAC	4 cut(s)	562, 725, 1905, 2262
AfiI	CCNNNNNNNGG	4 cut(s)	177, 493, 1013, 1696
AflII	CTTAAG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	1873
AhlI	ACTAGT	1 cut(s)	401
AjiI	CACGTC	2 cut(s)	1127, 2030
AjnI	CCWGG	6 cut(s)	188, 424, 1152, 1446, 2064, 2478
Alw21I	GWGCWC	5 cut(s)	579, 1132, 2005, 2330, 2338
Alw26I	GTCTC	2 cut(s)	1431, 2166
AlwI	GGATC	1 cut(s)	2595
AlwNI	CAGNNNCTG	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	2329
Aor13HI	TCCGGA	1 cut(s)	672
AoxI	GGCC	1 cut(s)	2387
ApeKI	GCWGC	4 cut(s)	308, 886, 1267, 1888
ApoI	RAATTY	8 cut(s)	166, 350, 365, 588, 940, 1289, 1685, 1850
Asp700I	GAANNNNTTC	1 cut(s)	1532
AspS9I	GGNCC	7 cut(s)	53, 333, 387, 2177, 2278, 2360, 2387
AsuHPI	GGTGA	3 cut(s)	759, 1712, 2057
AsuNHI	GCTAGC	2 cut(s)	323, 482
AvaI	CYCGRG	1 cut(s)	2329
AvaII	GGWCC	6 cut(s)	53, 333, 387, 2177, 2278, 2360
BaeGI	GKGCMC	1 cut(s)	624
BanII	GRGCYC	3 cut(s)	2005, 2330, 2338
BbsI	GAAGAC	1 cut(s)	895
Bbv12I	GWGCWC	5 cut(s)	579, 1132, 2005, 2330, 2338
BbvI	GCAGC	4 cut(s)	295, 898, 1279, 1875
BceAI	ACGGC	1 cut(s)	2374
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciT130I	CCWGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
BciVI	GTATCC	1 cut(s)	1413
BcoDI	GTCTC	2 cut(s)	1431, 2166
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	6 cut(s)	57, 324, 402, 483, 1998, 2345
BfmI	CTRYAG	2 cut(s)	309, 417
BfrI	CTTAAG	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	1413
BisI	GCNGC	4 cut(s)	309, 887, 1268, 1889
BlsI	GCNGC	4 cut(s)	310, 888, 1269, 1890
Bme1390I	CCNGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
Bme18I	GGWCC	6 cut(s)	53, 333, 387, 2177, 2278, 2360
BmeT110I	CYCGRG	1 cut(s)	2329
BmgBI	CACGTC	2 cut(s)	1127, 2030
BmgT120I	GGNCC	7 cut(s)	53, 333, 387, 2177, 2278, 2360, 2387
BmiI	GGNNCC	2 cut(s)	388, 2388
BmrFI	CCNGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
BmtI	GCTAGC	2 cut(s)	327, 486
BpiI	GAAGAC	1 cut(s)	895
BpmI	CTGGAG	2 cut(s)	102, 2148
BpuEI	CTTGAG	3 cut(s)	792, 1453, 2392
BsaBI	GATNNNNATC	2 cut(s)	846, 2586
BsaHI	GRCGYC	1 cut(s)	1817
BsaJI	CCNNGG	3 cut(s)	189, 2064, 2203
BsaWI	WCCGGW	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 493, 1013, 1696
Bse118I	RCCGGY	1 cut(s)	1423
Bse1I	ACTGG	2 cut(s)	735, 2156
Bse3DI	GCAATG	1 cut(s)	1122
Bse8I	GATNNNNATC	2 cut(s)	846, 2586
BseAI	TCCGGA	1 cut(s)	672
BseBI	CCWGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
BseDI	CCNNGG	3 cut(s)	189, 2064, 2203
BseGI	GGATG	8 cut(s)	199, 377, 1055, 1461, 2243, 2475, 2488, 2650
BseJI	GATNNNNATC	2 cut(s)	846, 2586
BseLI	CCNNNNNNNGG	4 cut(s)	177, 493, 1013, 1696
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	5 cut(s)	1481, 1934, 2315, 2513, 2624
BseNI	ACTGG	2 cut(s)	735, 2156
BseRI	GAGGAG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	4 cut(s)	295, 898, 1279, 1875
BseYI	CCCAGC	1 cut(s)	2449
BshFI	GGCC	1 cut(s)	2389
BsiHKAI	GWGCWC	5 cut(s)	579, 1132, 2005, 2330, 2338
BsiHKCI	CYCGRG	1 cut(s)	2329
BsiSI	CCGG	2 cut(s)	673, 1424
BslFI	GGGAC	3 cut(s)	400, 1137, 2616
BslI	CCNNNNNNNGG	4 cut(s)	177, 493, 1013, 1696
BsmAI	GTCTC	2 cut(s)	1431, 2166
BsmFI	GGGAC	3 cut(s)	400, 1137, 2616
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	2389
BsoBI	CYCGRG	1 cut(s)	2329
Bsp1286I	GDGCHC	6 cut(s)	579, 624, 1132, 2005, 2330, 2338
Bsp13I	TCCGGA	1 cut(s)	672
Bsp1407I	TGTACA	1 cut(s)	1903
Bsp143I	GATC	9 cut(s)	10, 85, 488, 871, 1273, 1405, 1472, 2017, 2587
BspACI	CCGC	1 cut(s)	1099
BspANI	GGCC	1 cut(s)	2389
BspCNI	CTCAG	5 cut(s)	1480, 1933, 2316, 2512, 2623
BspEI	TCCGGA	1 cut(s)	672
BspHI	TCATGA	3 cut(s)	232, 583, 1240
BspLI	GGNNCC	2 cut(s)	388, 2388
BspMAI	CTGCAG	2 cut(s)	313, 421
BspOI	GCTAGC	2 cut(s)	327, 486
BspPI	GGATC	1 cut(s)	2595
BspQI	GCTCTTC	1 cut(s)	876
BspTI	CTTAAG	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	1122
BsrFI	RCCGGY	1 cut(s)	1423
BsrGI	TGTACA	1 cut(s)	1903
BsrI	ACTGG	2 cut(s)	735, 2156
BssAI	RCCGGY	1 cut(s)	1423
BssECI	CCNNGG	3 cut(s)	189, 2064, 2203
BssMI	GATC	9 cut(s)	10, 85, 488, 871, 1273, 1405, 1472, 2017, 2587
BssNAI	GTATAC	1 cut(s)	1665
BssNI	GRCGYC	1 cut(s)	1817
BssT1I	CCWWGG	1 cut(s)	2203
Bst1107I	GTATAC	1 cut(s)	1665
Bst2UI	CCWGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
Bst4CI	ACNGT	6 cut(s)	333, 556, 1490, 1660, 2401, 2599
Bst6I	CTCTTC	3 cut(s)	876, 1569, 1773
BstACI	GRCGYC	1 cut(s)	1817
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	2 cut(s)	516, 2509
BstAUI	TGTACA	1 cut(s)	1903
BstC8I	GCNNGC	6 cut(s)	325, 484, 517, 521, 1101, 2306
BstDEI	CTNAG	5 cut(s)	1467, 1920, 2324, 2499, 2610
BstF5I	GGATG	8 cut(s)	199, 377, 1055, 1461, 2243, 2475, 2488, 2650
BstKTI	GATC	9 cut(s)	13, 88, 491, 874, 1276, 1408, 1475, 2020, 2590
BstMAI	GTCTC	2 cut(s)	1431, 2166
BstMBI	GATC	9 cut(s)	10, 85, 488, 871, 1273, 1405, 1472, 2017, 2587
BstMWI	GCNNNNNNNGC	6 cut(s)	416, 516, 1061, 1105, 2090, 2509
BstNI	CCWGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
BstNSI	RCATGY	5 cut(s)	523, 527, 668, 1510, 1877
BstSCI	CCNGG	6 cut(s)	188, 424, 1152, 1446, 2064, 2478
BstSFI	CTRYAG	2 cut(s)	309, 417
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	4 cut(s)	295, 898, 1279, 1875
BstV2I	GAAGAC	1 cut(s)	895
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstZ17I	GTATAC	1 cut(s)	1665
BsuI	GTATCC	1 cut(s)	1413
BsuRI	GGCC	1 cut(s)	2389
BtgZI	GCGATG	1 cut(s)	1617
BtrI	CACGTC	2 cut(s)	1127, 2030
BtsCI	GGATG	8 cut(s)	199, 377, 1055, 1461, 2243, 2475, 2488, 2650
BtsIMutI	CAGTG	2 cut(s)	2163, 2595
Cac8I	GCNNGC	6 cut(s)	325, 484, 517, 521, 1101, 2306
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	3 cut(s)	232, 583, 1240
Cfr10I	RCCGGY	1 cut(s)	1423
Cfr13I	GGNCC	7 cut(s)	53, 333, 387, 2177, 2278, 2360, 2387
CseI	GACGC	1 cut(s)	2613
Csp6I	GTAC	4 cut(s)	561, 724, 1904, 2261
CviQI	GTAC	4 cut(s)	561, 724, 1904, 2261
DdeI	CTNAG	5 cut(s)	1467, 1920, 2324, 2499, 2610
DpnI	GATC	9 cut(s)	12, 87, 490, 873, 1275, 1407, 1474, 2019, 2589
DpnII	GATC	9 cut(s)	10, 85, 488, 871, 1273, 1405, 1472, 2017, 2587
Eam1104I	CTCTTC	3 cut(s)	876, 1569, 1773
EarI	CTCTTC	3 cut(s)	876, 1569, 1773
Ecl136II	GAGCTC	3 cut(s)	2003, 2328, 2336
Eco130I	CCWWGG	1 cut(s)	2203
Eco24I	GRGCYC	3 cut(s)	2005, 2330, 2338
Eco47I	GGWCC	6 cut(s)	53, 333, 387, 2177, 2278, 2360
Eco53kI	GAGCTC	3 cut(s)	2003, 2328, 2336
Eco57I	CTGAAG	2 cut(s)	1016, 1758
Eco88I	CYCGRG	1 cut(s)	2329
EcoICRI	GAGCTC	3 cut(s)	2003, 2328, 2336
EcoO109I	RGGNCCY	1 cut(s)	2278
EcoRI	GAATTC	1 cut(s)	1850
EcoRII	CCWGG	6 cut(s)	188, 424, 1152, 1446, 2064, 2478
EcoT14I	CCWWGG	1 cut(s)	2203
EcoT22I	ATGCAT	2 cut(s)	525, 1304
EcoT38I	GRGCYC	3 cut(s)	2005, 2330, 2338
ErhI	CCWWGG	1 cut(s)	2203
FalI	AAGNNNNNCTT	4 cut(s)	801, 833, 912, 944
FaqI	GGGAC	3 cut(s)	400, 1137, 2616
FauI	CCCGC	1 cut(s)	1092
FauNDI	CATATG	2 cut(s)	1382, 2439
FblI	GTMKAC	5 cut(s)	925, 1411, 1460, 1664, 1870
Fnu4HI	GCNGC	4 cut(s)	309, 887, 1268, 1889
FokI	GGATG	8 cut(s)	206, 384, 1062, 1468, 2230, 2462, 2495, 2637
FriOI	GRGCYC	3 cut(s)	2005, 2330, 2338
Fsp4HI	GCNGC	4 cut(s)	309, 887, 1268, 1889
FspBI	CTAG	6 cut(s)	57, 324, 402, 483, 1998, 2345
GluI	GCNGC	4 cut(s)	309, 887, 1268, 1889
GsaI	CCCAGC	1 cut(s)	2453
GsuI	CTGGAG	2 cut(s)	102, 2148
HaeIII	GGCC	1 cut(s)	2389
HapII	CCGG	2 cut(s)	673, 1424
HgaI	GACGC	1 cut(s)	2613
Hin1I	GRCGYC	1 cut(s)	1817
HindIII	AAGCTT	4 cut(s)	264, 772, 1247, 2103
HpaII	CCGG	2 cut(s)	673, 1424
HphI	GGTGA	3 cut(s)	759, 1712, 2057
Hpy166II	GTNNAC	8 cut(s)	926, 1021, 1412, 1461, 1665, 1871, 1904, 1906
Hpy188I	TCNGA	9 cut(s)	216, 226, 876, 1477, 1822, 2142, 2269, 2537, 2613
Hpy8I	GTNNAC	8 cut(s)	926, 1021, 1412, 1461, 1665, 1871, 1904, 1906
Hpy99I	CGWCG	2 cut(s)	333, 2031
HpyAV	CCTTC	6 cut(s)	33, 283, 528, 791, 2045, 2186
HpyCH4III	ACNGT	6 cut(s)	333, 556, 1490, 1660, 2401, 2599
HpyCH4IV	ACGT	5 cut(s)	1126, 1817, 1936, 2008, 2029
HpyF10VI	GCNNNNNNNGC	6 cut(s)	416, 516, 1061, 1105, 2090, 2509
HpyF3I	CTNAG	5 cut(s)	1467, 1920, 2324, 2499, 2610
HpySE526I	ACGT	5 cut(s)	1126, 1817, 1936, 2008, 2029
Hsp92I	GRCGYC	1 cut(s)	1817
Kpn2I	TCCGGA	1 cut(s)	672
Kzo9I	GATC	9 cut(s)	10, 85, 488, 871, 1273, 1405, 1472, 2017, 2587
LguI	GCTCTTC	1 cut(s)	876
LmnI	GCTCC	4 cut(s)	217, 1009, 1135, 2341
Lsp1109I	GCAGC	4 cut(s)	295, 898, 1279, 1875
MaeI	CTAG	6 cut(s)	57, 324, 402, 483, 1998, 2345
MaeII	ACGT	5 cut(s)	1126, 1817, 1936, 2008, 2029
MaeIII	GTNAC	7 cut(s)	103, 765, 1718, 2009, 2072, 2207, 2351
MalI	GATC	9 cut(s)	12, 87, 490, 873, 1275, 1407, 1474, 2019, 2589
MboI	GATC	9 cut(s)	10, 85, 488, 871, 1273, 1405, 1472, 2017, 2587
MfeI	CAATTG	2 cut(s)	867, 2456
MhlI	GDGCHC	6 cut(s)	579, 624, 1132, 2005, 2330, 2338
MlyI	GAGTC	1 cut(s)	2003
MmeI	TCCRAC	1 cut(s)	1919
Mph1103I	ATGCAT	2 cut(s)	525, 1304
MroI	TCCGGA	1 cut(s)	672
MroXI	GAANNNNTTC	1 cut(s)	1532
MslI	CAYNNNNRTG	2 cut(s)	582, 2291
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	2 cut(s)	673, 1424
MspR9I	CCNGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
MunI	CAATTG	2 cut(s)	867, 2456
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
MwoI	GCNNNNNNNGC	6 cut(s)	416, 516, 1061, 1105, 2090, 2509
NdeI	CATATG	2 cut(s)	1382, 2439
NdeII	GATC	9 cut(s)	10, 85, 488, 871, 1273, 1405, 1472, 2017, 2587
NheI	GCTAGC	2 cut(s)	323, 482
NlaIV	GGNNCC	2 cut(s)	388, 2388
NmuCI	GTSAC	2 cut(s)	765, 1718
NsiI	ATGCAT	2 cut(s)	525, 1304
NspI	RCATGY	5 cut(s)	523, 527, 668, 1510, 1877
PaeI	GCATGC	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	2329
PagI	TCATGA	3 cut(s)	232, 583, 1240
PciI	ACATGT	1 cut(s)	1873
PciSI	GCTCTTC	1 cut(s)	876
PcsI	WCGNNNNNNNCGW	2 cut(s)	475, 484
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	1532
PfoI	TCCNGGA	1 cut(s)	2478
PkrI	GCNGC	4 cut(s)	310, 888, 1269, 1890
PleI	GAGTC	1 cut(s)	2002
PpsI	GAGTC	1 cut(s)	2002
PpuMI	RGGWCCY	1 cut(s)	2278
PscI	ACATGT	1 cut(s)	1873
Psp124BI	GAGCTC	3 cut(s)	2005, 2330, 2338
Psp1406I	AACGTT	2 cut(s)	1936, 2008
Psp5II	RGGWCCY	1 cut(s)	2278
Psp6I	CCWGG	6 cut(s)	188, 424, 1152, 1446, 2064, 2478
PspFI	CCCAGC	1 cut(s)	2449
PspGI	CCWGG	6 cut(s)	188, 424, 1152, 1446, 2064, 2478
PspN4I	GGNNCC	2 cut(s)	388, 2388
PspPI	GGNCC	7 cut(s)	53, 333, 387, 2177, 2278, 2360, 2387
PspPPI	RGGWCCY	1 cut(s)	2278
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PstI	CTGCAG	2 cut(s)	313, 421
PstNI	CAGNNNCTG	1 cut(s)	425
RsaI	GTAC	4 cut(s)	562, 725, 1905, 2262
RsaNI	GTAC	4 cut(s)	561, 724, 1904, 2261
RseI	CAYNNNNRTG	2 cut(s)	582, 2291
SacI	GAGCTC	3 cut(s)	2005, 2330, 2338
SapI	GCTCTTC	1 cut(s)	876
SatI	GCNGC	4 cut(s)	309, 887, 1268, 1889
Sau3AI	GATC	9 cut(s)	10, 85, 488, 871, 1273, 1405, 1472, 2017, 2587
Sau96I	GGNCC	7 cut(s)	53, 333, 387, 2177, 2278, 2360, 2387
SchI	GAGTC	1 cut(s)	2003
ScrFI	CCNGG	6 cut(s)	190, 426, 1154, 1448, 2066, 2480
SduI	GDGCHC	6 cut(s)	579, 624, 1132, 2005, 2330, 2338
SfcI	CTRYAG	2 cut(s)	309, 417
Sfr274I	CTCGAG	1 cut(s)	2329
SinI	GGWCC	6 cut(s)	53, 333, 387, 2177, 2278, 2360
SlaI	CTCGAG	1 cut(s)	2329
SmiMI	CAYNNNNRTG	2 cut(s)	582, 2291
SmlI	CTYRAG	5 cut(s)	458, 807, 1432, 2329, 2407
SmoI	CTYRAG	5 cut(s)	458, 807, 1432, 2329, 2407
SpeI	ACTAGT	1 cut(s)	401
SphI	GCATGC	1 cut(s)	523
SsiI	CCGC	1 cut(s)	1099
SspI	AATATT	4 cut(s)	1677, 1912, 2080, 2239
SspMI	CTAG	6 cut(s)	57, 324, 402, 483, 1998, 2345
SstI	GAGCTC	3 cut(s)	2005, 2330, 2338
StyD4I	CCNGG	6 cut(s)	188, 424, 1152, 1446, 2064, 2478
StyI	CCWWGG	1 cut(s)	2203
TaaI	ACNGT	6 cut(s)	333, 556, 1490, 1660, 2401, 2599
TaiI	ACGT	5 cut(s)	1129, 1820, 1939, 2011, 2032
TaqI	TCGA	7 cut(s)	88, 547, 616, 1762, 1982, 2330, 2645
TatI	WGTACW	2 cut(s)	560, 1903
TscAI	CASTG	2 cut(s)	2163, 2602
TseFI	GTSAC	2 cut(s)	765, 1718
TseI	GCWGC	4 cut(s)	308, 886, 1267, 1888
Tsp45I	GTSAC	2 cut(s)	765, 1718
TspGWI	ACGGA	3 cut(s)	252, 951, 1550
TspRI	CASTG	2 cut(s)	2163, 2602
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	6 cut(s)	53, 333, 387, 2177, 2278, 2360
XapI	RAATTY	8 cut(s)	166, 350, 365, 588, 940, 1289, 1685, 1850
XbaI	TCTAGA	1 cut(s)	1997
XceI	RCATGY	5 cut(s)	523, 527, 668, 1510, 1877
XhoI	CTCGAG	1 cut(s)	2329
XmiI	GTMKAC	5 cut(s)	925, 1411, 1460, 1664, 1870
XmnI	GAANNNNTTC	1 cut(s)	1532
XspI	CTAG	6 cut(s)	57, 324, 402, 483, 1998, 2345
ZraI	GACGTC	1 cut(s)	1818
Zsp2I	ATGCAT	2 cut(s)	525, 1304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.