Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015673

Physical Location & Seq

Genomic Coordinates Forward (+)

46191220 .. 46192290

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1341500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGACACTGTCGTGGACTCTCGAGAAAAGCACAGAAAAATCTGAGCTTCAATTCTCCGAGGACGAGGAGGCACTTATCATAAGAATGTACAATCTAGTAGGGGAGAGGTGGGCGCTGATTGCTGGGAGGATTCCGGGAAGAACAGCAGAAGAAATTGAGAAGTATTGGTCCTCTACATACTCAACTAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010016 GO:0010033 GO:0010061 GO:0010063 GO:0010103 GO:0010374 GO:0010376 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0022603 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042659 GO:0042660 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0046677 GO:0048367 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1903888 GO:1903890 GO:1905421 GO:1905423 GO:2000026 GO:2000067 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

65

Amino Acids

7.46

Weight (kDa)

4.67

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 57	1.2e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43450 FvH4_6g43450
malus_domestica	MD05G1341500.v1.1
prunus_persica	Prupe.3G219200_v2.0.a1
pyrus_communis	pycom10g26710
rosa_chinensis	RchiOBHm_Chr2g0159921
rosa_multiflora	Rmu_sc0002508.1_g000034 Rmu_sc0012797.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090200
rosa_rugosa	Rorug02G0479000 Rorug02G0479100
rosa_samantha	Rh2AG545500 Rh2BG559000 Rh2CG529100 Rh2DG567700
rosa_wichuraiana	Rw2G045130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	50
AhlI	ACTAGT	1 cut(s)	185
AleI	CACNNNNGTG	1 cut(s)	10
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	135
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	2 cut(s)	95, 186
BfoI	RGCGCY	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	20
Bsp1407I	TGTACA	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	5
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	1 cut(s)	46
CviKI_1	RGCY	1 cut(s)	46
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	20
FaiI	YATR	2 cut(s)	80, 178
FspBI	CTAG	2 cut(s)	95, 186
GlaI	GCGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	116
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	2 cut(s)	16, 130
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	43, 58
Hpy188III	TCNNGA	2 cut(s)	20, 22
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	113
LpnPI	CCDG	2 cut(s)	108, 147
MaeI	CTAG	2 cut(s)	95, 186
MboII	GAAGA	2 cut(s)	150, 161
MluCI	AATT	2 cut(s)	50, 153
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	6 cut(s)	52, 58, 61, 99, 120, 181
MslI	CAYNNNNRTG	2 cut(s)	10, 83
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	133
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	2 cut(s)	10, 83
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	2 cut(s)	48, 110
Sfr274I	CTCGAG	1 cut(s)	20
SgeI	CNNG	9 cut(s)	24, 32, 34, 70, 76, 107, 135, 146, 147
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	20
SmiMI	CAYNNNNRTG	2 cut(s)	10, 83
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	2 cut(s)	50, 153
SspMI	CTAG	2 cut(s)	95, 186
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	50, 153
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	130
TscAI	CASTG	1 cut(s)	12
TspRI	CASTG	1 cut(s)	12
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	168
XhoI	CTCGAG	1 cut(s)	20
XspI	CTAG	2 cut(s)	95, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.