Rh2AG545500
MYB Family

Transcription factor CPC-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015673
Physical Location & Seq
Reverse (-)
77485393 .. 77486499
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG545500.1

Sequence Viewer

Length: 225 bp
ATGGCTGACTTGGATCACTCTTCTGATGAAAGCTCCGTGGATTCCAGAGCAGAGGATACTAGTCAAGACTCTAAGCTCGACTTTTCAGAAGATGAGGAATTTCTTATCACTAGGATGTTTAACCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGATCAGCAGAGGAGATTGAGAAGTACTGGAATTCAAGATACTCAACAAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

74

Amino Acids

8.52

Weight (kDa)

4.34

Isoelectric Point (pI)

65.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 26 - 68 3.2e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g43450 FvH4_6g43450
malus_domestica MD05G1341500.v1.1
prunus_persica Prupe.3G219200_v2.0.a1
pyrus_communis pycom10g26710
rosa_chinensis RchiOBHm_Chr2g0159921
rosa_multiflora Rmu_sc0002508.1_g000034 Rmu_sc0012797.1_g000005
rosa_roxburghii Rroxscaffold_2G00090200
rosa_rugosa Rorug02G0479000 Rorug02G0479100
rosa_samantha Rh2AG545500 Rh2BG559000 Rh2CG529100 Rh2DG567700
rosa_wichuraiana Rw2G045130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 21
AcsI RAATTY 3 cut(s) 98, 159, 199
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 204
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 2 cut(s) 123, 163
AluBI AGCT 2 cut(s) 33, 76
AluI AGCT 2 cut(s) 33, 76
AlwI GGATC 1 cut(s) 21
ApoI RAATTY 3 cut(s) 98, 159, 199
BciT130I CCWGG 2 cut(s) 125, 165
BciVI GTATCC 1 cut(s) 49
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 2 cut(s) 60, 111
BfuI GTATCC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 125, 165
BmrFI CCNGG 2 cut(s) 125, 165
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 125, 165
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 130
Bsp143I GATC 2 cut(s) 13, 170
BspPI GGATC 1 cut(s) 21
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 13, 170
Bst2UI CCWGG 2 cut(s) 125, 165
Bst6I CTCTTC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 2 cut(s) 16, 173
BstMBI GATC 2 cut(s) 13, 170
BstNI CCWGG 2 cut(s) 125, 165
BstSCI CCNGG 2 cut(s) 123, 163
BsuI GTATCC 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 120
CsiI ACCWGGT 1 cut(s) 123
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 3 cut(s) 5, 33, 76
CviKI_1 RGCY 3 cut(s) 5, 33, 76
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 15, 172
DpnII GATC 2 cut(s) 13, 170
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EcoRI GAATTC 2 cut(s) 159, 199
EcoRII CCWGG 2 cut(s) 123, 163
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FokI GGATG 1 cut(s) 127
FspBI CTAG 2 cut(s) 60, 111
HinfI GANTC 2 cut(s) 41, 68
Hpy188I TCNGA 2 cut(s) 25, 88
Hpy188III TCNNGA 3 cut(s) 45, 65, 204
HpyF3I CTNAG 1 cut(s) 72
Kzo9I GATC 2 cut(s) 13, 170
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 7 cut(s) 58, 110, 137, 138, 150, 177, 181
MabI ACCWGGT 1 cut(s) 123
MaeI CTAG 2 cut(s) 60, 111
MalI GATC 2 cut(s) 15, 172
MboI GATC 2 cut(s) 13, 170
MboII GAAGA 4 cut(s) 12, 101, 168, 180
MluCI AATT 3 cut(s) 98, 159, 199
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 4 cut(s) 46, 88, 129, 172
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 125, 165
MvaI CCWGG 2 cut(s) 125, 165
NdeII GATC 2 cut(s) 13, 170
PfeI GAWTC 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 163
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 123, 163
PspGI CCWGG 2 cut(s) 123, 163
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 120
Sau3AI GATC 2 cut(s) 13, 170
ScaI AGTACT 1 cut(s) 194
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 125, 165
SetI ASST 4 cut(s) 35, 78, 126, 140
SexAI ACCWGGT 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 113
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 3 cut(s) 98, 159, 199
SspMI CTAG 2 cut(s) 60, 111
StyD4I CCNGG 2 cut(s) 123, 163
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 98, 159, 199
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 25
XapI RAATTY 3 cut(s) 98, 159, 199
XspI CTAG 2 cut(s) 60, 111
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.