Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009605

Physical Location & Seq

Genomic Coordinates Reverse (-)

47173724 .. 47176192

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1355500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCACATGTTGTTACCTGTGGCAGTATTCCGTTGGAATCATCCTACCAAAGGGTACCTAGGTGTGTATATGTTTCCACCGAGTTGTGTGAATCTAAAGGATGCTGTGTGCGCAAGTCGGAGAATAAAAAATCTAGACATTCAGAGAAATATGTATCTGACTTCTACATATCAGACTTCCAATCGGGTTTAAGAGCATTAGTGAAAGCTGGCTATGGAGCCAAGGTTGCCCCATTCGTAAAACCAGCTACTGTAGTGGACGTGACAAAGGAAAACAGAGAGTTATCTCCAAGTTTTTTGCGCTGGCTTGGTGAGCGCAACCTGTCTACCGATGACCGTGTAATGCGCCTCAAAGAAGGGTATATTAAAGAGGGCAGCACTGTAAGTGTGATTGGGGTTGTCAGACGCCACGATAATGTGGTCATGATTGTTCCTCCAACGGAGCCTGTGTCAACAGGCTTTCAATGGTTTCGCTGCCTTCTCCCGACCTATGTTGAAGGTCTCATTCTGACGTGCGATGATAATCAGAATGCTGATGTCGTTCCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.48

Weight (kDa)

8.45

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22290
fragaria_vesca	FvH4_3g01150 FvH4_3g01150
malus_domestica	MD05G1355500.v1.1 MD05G1355900.v1.1 MD10G1329200.v1.1
prunus_persica	Prupe.4G012800_v2.0.a1 Prupe.4G012800_v2.0.a1
pyrus_communis	pycom05g32200 pycom10g27900
rosa_chinensis	RchiOBHm_Chr5g0001711
rosa_laevigata	RLG00000030961
rosa_multiflora	Rmu_co8424019.1_g000001 Rmu_ssc0000237.1_g000022
rosa_roxburghii	Rroxscaffold_1G00071170 Rroxscaffold_1G00074600
rosa_rugosa	Rorug04G0392100 Rorug04G0392100
rosa_samantha	Rh5BG016900 Rh5CG014500 Rh5DG014900
rosa_wichuraiana	Rw5G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	113
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	406
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	464, 497
AjiI	CACGTC	2 cut(s)	262, 513
AluBI	AGCT	2 cut(s)	209, 248
AluI	AGCT	2 cut(s)	209, 248
Alw26I	GTCTC	1 cut(s)	506
AlwNI	CAGNNNCTG	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	375, 474
Asp718I	GGTACC	1 cut(s)	55
AspA2I	CCTAGG	1 cut(s)	59
AspLEI	GCGC	4 cut(s)	114, 303, 318, 348
AsuHPI	GGTGA	1 cut(s)	323
AvrII	CCTAGG	1 cut(s)	59
BaeI	ACNNNNGTAYC	2 cut(s)	47, 80
BanI	GGYRCC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	387, 461
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	2 cut(s)	60, 135
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	2 cut(s)	376, 475
BlnI	CCTAGG	1 cut(s)	59
BlsI	GCNGC	2 cut(s)	377, 476
BmgBI	CACGTC	2 cut(s)	262, 513
BmiI	GGNNCC	3 cut(s)	57, 220, 444
BmsI	GCATC	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	59, 222
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	59, 222
BseGI	GGATG	2 cut(s)	41, 107
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	387, 461
BshNI	GGYRCC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	535
Bso31I	GGTCTC	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	3 cut(s)	57, 220, 444
BspT107I	GGYRCC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	59, 222
BssNI	GRCGYC	1 cut(s)	406
BssT1I	CCWWGG	2 cut(s)	59, 222
Bst4CI	ACNGT	3 cut(s)	253, 338, 382
BstACI	GRCGYC	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	211, 305
BstENI	CCTNNNNNAGG	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	41, 107
BstHHI	GCGC	4 cut(s)	114, 303, 318, 348
BstMAI	GTCTC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 227, 313
BstNSI	RCATGY	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	387, 461
BtgZI	GCGATG	1 cut(s)	531
BtrI	CACGTC	2 cut(s)	262, 513
BtsCI	GGATG	2 cut(s)	41, 107
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	211, 305
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	4 cut(s)	114, 303, 318, 348
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	2 cut(s)	8, 424
CviJI	RGCY	7 cut(s)	209, 213, 221, 248, 307, 445, 459
CviKI_1	RGCY	7 cut(s)	209, 213, 221, 248, 307, 445, 459
CviQI	GTAC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	59, 222
Eco31I	GGTCTC	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	59, 222
ErhI	CCWWGG	2 cut(s)	59, 222
FaeI	CATG	2 cut(s)	11, 427
FaiI	YATR	9 cut(s)	9, 70, 72, 153, 170, 216, 363, 425, 492
FatI	CATG	2 cut(s)	7, 423
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	2 cut(s)	376, 475
FokI	GGATG	2 cut(s)	28, 114
Fsp4HI	GCNGC	2 cut(s)	376, 475
FspBI	CTAG	2 cut(s)	60, 135
FspI	TGCGCA	1 cut(s)	113
GlaI	GCGC	4 cut(s)	113, 302, 317, 347
GluI	GCNGC	2 cut(s)	376, 475
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	4 cut(s)	114, 303, 318, 348
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	2 cut(s)	11, 427
Hin6I	GCGC	4 cut(s)	112, 301, 316, 346
HinP1I	GCGC	4 cut(s)	112, 301, 316, 346
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	2 cut(s)	38, 92
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	3 cut(s)	259, 327, 453
Hpy188I	TCNGA	7 cut(s)	121, 145, 160, 175, 404, 510, 528
Hpy188III	TCNNGA	3 cut(s)	135, 424, 484
Hpy8I	GTNNAC	3 cut(s)	259, 327, 453
HpyAV	CCTTC	3 cut(s)	350, 488, 491
HpyCH4III	ACNGT	3 cut(s)	253, 338, 382
HpyCH4IV	ACGT	2 cut(s)	261, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 227, 313
HpySE526I	ACGT	2 cut(s)	261, 512
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	11, 427
HspAI	GCGC	4 cut(s)	112, 301, 316, 346
KpnI	GGTACC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	218, 442
LpnPI	CCDG	7 cut(s)	31, 195, 258, 289, 335, 441, 459
Lsp1109I	GCAGC	2 cut(s)	387, 461
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	2 cut(s)	60, 135
MaeII	ACGT	2 cut(s)	261, 512
MaeIII	GTNAC	2 cut(s)	13, 262
MmeI	TCCRAC	3 cut(s)	15, 99, 461
MnlI	CCTC	3 cut(s)	359, 364, 444
MseI	TTAA	2 cut(s)	191, 366
MslI	CAYNNNNRTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	535
MwoI	GCNNNNNNNGC	3 cut(s)	111, 227, 313
NlaIII	CATG	2 cut(s)	11, 427
NlaIV	GGNNCC	3 cut(s)	57, 220, 444
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	113
NspI	RCATGY	1 cut(s)	11
PagI	TCATGA	1 cut(s)	423
PciI	ACATGT	1 cut(s)	7
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	38, 92
PkrI	GCNGC	2 cut(s)	377, 476
PscI	ACATGT	1 cut(s)	7
PspN4I	GGNNCC	3 cut(s)	57, 220, 444
PstNI	CAGNNNCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	191, 366
SatI	GCNGC	2 cut(s)	376, 475
SfaNI	GCATC	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	414
SspMI	CTAG	2 cut(s)	60, 135
StyI	CCWWGG	2 cut(s)	59, 222
TaaI	ACNGT	3 cut(s)	253, 338, 382
TaiI	ACGT	2 cut(s)	264, 515
TfiI	GAWTC	2 cut(s)	38, 92
Tru1I	TTAA	2 cut(s)	191, 366
Tru9I	TTAA	2 cut(s)	191, 366
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	375, 474
Tsp45I	GTSAC	1 cut(s)	262
TspGWI	ACGGA	2 cut(s)	21, 455
TspRI	CASTG	1 cut(s)	385
XagI	CCTNNNNNAGG	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	1 cut(s)	11
XmaJI	CCTAGG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	2 cut(s)	60, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.