pycom05g32200

membrane protein At1g16860-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
31712882 .. 31715434
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32200.4

Sequence Viewer

Length: 1293 bp
ATGGGTAGCCGAATCCCATCTCACCAGCTCAGCAGCGGGCTGGTAGTGTCGGGCCGACCCGAGCAGCTAAAAGAGCGCCAACCGACAATGGCGTCACGCGCCGTCCCATACACTGGCGGTGATGTGAAGAAATCTGGAGAGCTAGGCAAAATGTTCGACATACAAATTGCCGATAATCCTCTTTCTGCCCCATCCAGCGGACCTCCTCCTCCTTCCAAGCTCTCAGGCTCACGCCCTTCCTCCTCCTCTCAACATAACAGCGGATCCGTCCGATCGGGGCCCAATTCCGGTCAGATTTCTAAGAAATCCTCCGGCCCCTTGACTCCACAGCTTCAGGTAACTGGCCTTATCACCTCCGGCCCATTGGGCTCGGGCCCACTAAGCTCCGGGCCCAGGAGGTCGTCCGGCCAGCTGGAACAGACGGGGTCGATGAGCAAAAGCAAAGTGGTGTATGGGTCGGCGGTTACCACCTTAACCGACGAGGTCAGGGTGGGGTTTCGTGTGTCAAAGGTTGCGGTGTGGGTGTTCATGGTGGTGGCGGCGATGGGGTTGCTAGTGGGTGGGTTTCTGATGGTGGCCGTCAAGAAATGGGTGATTCTGGTGGCGGTGGCGCTCTTTCTGGTGCCGGTGTTGGTGGTTATTGTCTGGAATTTCGCGTGGCGAAGAAGAGGGCTGCTAGGGTTTGTGAGGAGGTACCCAGATGCTGAGCTCAGGGGTGCCATTGACGGACAGTACGTCAAGGTTACAGGGGTTGTTACCTGTGGCAGTATTCCGTTGGAATCATCCTACCAAAGGGTACCTAGGTGTGTATATGTTTCCACCGAGTTGTGTGAATCTAAAGGATGCTGTGTGCGCAAGTCGGAGAAAAAAAAATCTAGACATTCAGAGAAATATGTGTCTGACTTTTACATATCAGACTTCCAATCGGGTTTAAGAGCATTAGTGAAAGCTGGCTATGGAGCCAAGGTTGCCCCTTTCGTAAAACCAGCTACTGTGGTGGATGTGAGAAAGCAAAACAGAGAGTTATCTCCAAGTTTTTTGCGCTGGCTTGGTGAGCGCAACCTCTCTACTGATGACCGTGTAATGCGCCTCAAAGAAGGGTATATTAAAGAGGGCAGCACTGTAAGTGTGATGGGGGTTGTCAGACGCCACGATAATGTGGTCATGATTGTTCCTCCAACGGAGCCTGTGTCAACAGGCTTTCAATGGTTTCGCTGCCTTCTCCCGACCTATGTTGAAGGTCTCATTCTGACGTGCGATGATAATCAGAATGCTGATGTGGTTCCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

46.54

Weight (kDa)

9.88

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
Acc16I TGCGCA 1 cut(s) 854
Acc65I GGTACC 2 cut(s) 693, 796
AccB1I GGYRCC 4 cut(s) 622, 693, 716, 796
AccB7I CCANNNNNTGG 1 cut(s) 113
AccII CGCG 2 cut(s) 99, 656
AciI CCGC 8 cut(s) 36, 117, 198, 261, 461, 515, 539, 605
AclWI GGATC 2 cut(s) 258, 271
AcoI YGGCCR 2 cut(s) 406, 576
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 2 cut(s) 92, 1147
AfaI GTAC 3 cut(s) 695, 734, 798
AfiI CCNNNNNNNGG 5 cut(s) 113, 197, 287, 393, 792
AgsI TTSAA 2 cut(s) 1205, 1238
AhdI GACNNNNNGTC 1 cut(s) 734
AjiI CACGTC 1 cut(s) 1254
AjnI CCWGG 1 cut(s) 392
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 1 cut(s) 1247
AlwI GGATC 2 cut(s) 258, 271
AlwNI CAGNNNCTG 2 cut(s) 704, 992
Ama87I CYCGRG 2 cut(s) 59, 370
AoxI GGCC 9 cut(s) 52, 278, 313, 343, 358, 373, 389, 406, 576
ApaI GGGCCC 3 cut(s) 282, 377, 393
ApeKI GCWGC 5 cut(s) 33, 64, 673, 1116, 1215
ApoI RAATTY 1 cut(s) 649
Asp718I GGTACC 2 cut(s) 693, 796
AspA2I CCTAGG 1 cut(s) 800
AspLEI GCGC 7 cut(s) 78, 101, 613, 855, 1044, 1059, 1089
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 5 cut(s) 14, 131, 343, 604, 1064
AvaI CYCGRG 2 cut(s) 59, 370
AvaII GGWCC 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 800
BaeGI GKGCMC 3 cut(s) 282, 377, 393
BaeI ACNNNNGTAYC 2 cut(s) 788, 821
BamHI GGATCC 1 cut(s) 263
BanI GGYRCC 4 cut(s) 622, 693, 716, 796
BanII GRGCYC 5 cut(s) 282, 371, 377, 393, 711
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 5 cut(s) 45, 76, 660, 1128, 1202
BccI CCATC 5 cut(s) 25, 199, 538, 565, 1126
BceAI ACGGC 2 cut(s) 86, 563
BcgI CGANNNNNNTGC 4 cut(s) 136, 170, 532, 566
BciT130I CCWGG 1 cut(s) 394
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 1247
BfaI CTAG 5 cut(s) 143, 554, 677, 801, 876
BfoI RGCGCY 2 cut(s) 79, 614
BglI GCCNNNNNGGC 1 cut(s) 366
BisI GCNGC 6 cut(s) 34, 65, 540, 674, 1117, 1216
BlnI CCTAGG 1 cut(s) 800
BlpI GCTNAGC 2 cut(s) 29, 705
BlsI GCNGC 6 cut(s) 35, 66, 541, 675, 1118, 1217
Bme1390I CCNGG 2 cut(s) 388, 394
Bme18I GGWCC 1 cut(s) 200
BmeRI GACNNNNNGTC 1 cut(s) 734
BmeT110I CYCGRG 2 cut(s) 59, 370
BmgBI CACGTC 1 cut(s) 1254
BmrFI CCNGG 2 cut(s) 388, 394
BmsI GCATC 2 cut(s) 691, 833
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 710
Bpu1102I GCTNAGC 2 cut(s) 29, 705
BpuMI CCSGG 1 cut(s) 388
BsaBI GATNNNNATC 1 cut(s) 1263
BsaHI GRCGYC 2 cut(s) 92, 1147
BsaI GGTCTC 1 cut(s) 1247
BsaJI CCNNGG 3 cut(s) 392, 800, 963
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 4 cut(s) 951, 981, 1175, 1205
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 197, 287, 393, 792
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 2 cut(s) 118, 346
Bse8I GATNNNNATC 1 cut(s) 1263
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 3 cut(s) 392, 800, 963
BseGI GGATG 4 cut(s) 191, 782, 848, 1006
BseJI GATNNNNATC 1 cut(s) 1263
BseLI CCNNNNNNNGG 5 cut(s) 113, 197, 287, 393, 792
BseMII CTCAG 4 cut(s) 43, 237, 696, 724
BseNI ACTGG 2 cut(s) 118, 346
BseRI GAGGAG 5 cut(s) 195, 198, 232, 235, 703
BseSI GKGCMC 3 cut(s) 282, 377, 393
BseXI GCAGC 5 cut(s) 45, 76, 660, 1128, 1202
Bsh1236I CGCG 2 cut(s) 99, 656
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 9 cut(s) 54, 280, 315, 345, 360, 375, 391, 408, 578
BshNI GGYRCC 4 cut(s) 622, 693, 716, 796
BsiEI CGRYCG 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 711
BsiHKCI CYCGRG 2 cut(s) 59, 370
BsiSI CCGG 6 cut(s) 288, 312, 357, 387, 405, 626
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 5 cut(s) 113, 197, 287, 393, 792
BsmAI GTCTC 1 cut(s) 1247
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 1276
BsnI GGCC 9 cut(s) 54, 280, 315, 345, 360, 375, 391, 408, 578
Bso31I GGTCTC 1 cut(s) 1247
BsoBI CYCGRG 2 cut(s) 59, 370
Bsp120I GGGCCC 3 cut(s) 278, 373, 389
Bsp1286I GDGCHC 5 cut(s) 282, 371, 377, 393, 711
Bsp143I GATC 2 cut(s) 263, 272
Bsp1720I GCTNAGC 2 cut(s) 29, 705
BspACI CCGC 8 cut(s) 36, 117, 198, 261, 461, 515, 539, 605
BspANI GGCC 9 cut(s) 54, 280, 315, 345, 360, 375, 391, 408, 578
BspCNI CTCAG 4 cut(s) 42, 236, 697, 723
BspFNI CGCG 2 cut(s) 99, 656
BspHI TCATGA 1 cut(s) 1164
BspPI GGATC 2 cut(s) 258, 271
BspT107I GGYRCC 4 cut(s) 622, 693, 716, 796
BspTNI GGTCTC 1 cut(s) 1247
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 2 cut(s) 118, 346
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 3 cut(s) 392, 800, 963
BssMI GATC 2 cut(s) 263, 272
BssNI GRCGYC 2 cut(s) 92, 1147
BssT1I CCWWGG 2 cut(s) 800, 963
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 4 cut(s) 732, 994, 1079, 1123
Bst6I CTCTTC 1 cut(s) 661
BstACI GRCGYC 2 cut(s) 92, 1147
BstC8I GCNNGC 4 cut(s) 38, 410, 952, 1046
BstDEI CTNAG 6 cut(s) 29, 223, 300, 380, 705, 710
BstEII GGTNACC 1 cut(s) 463
BstENI CCTNNNNNAGG 1 cut(s) 790
BstF5I GGATG 4 cut(s) 191, 782, 848, 1006
BstFNI CGCG 2 cut(s) 99, 656
BstH2I RGCGCY 2 cut(s) 79, 614
BstHHI GCGC 7 cut(s) 78, 101, 613, 855, 1044, 1059, 1089
BstKTI GATC 2 cut(s) 266, 275
BstMAI GTCTC 1 cut(s) 1247
BstMBI GATC 2 cut(s) 263, 272
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 7 cut(s) 73, 98, 366, 381, 852, 968, 1054
BstNI CCWGG 1 cut(s) 394
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 386, 392
BstSLI GKGCMC 3 cut(s) 282, 377, 393
BstUI CGCG 2 cut(s) 99, 656
BstV1I GCAGC 5 cut(s) 45, 76, 660, 1128, 1202
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 9 cut(s) 54, 280, 315, 345, 360, 375, 391, 408, 578
BtgZI GCGATG 2 cut(s) 557, 1272
BtrI CACGTC 1 cut(s) 1254
BtsCI GGATG 4 cut(s) 191, 782, 848, 1006
BtsIMutI CAGTG 2 cut(s) 111, 1119
Cac8I GCNNGC 4 cut(s) 38, 410, 952, 1046
CaiI CAGNNNCTG 2 cut(s) 704, 992
CciI TCATGA 1 cut(s) 1164
CfoI GCGC 7 cut(s) 78, 101, 613, 855, 1044, 1059, 1089
Cfr10I RCCGGY 1 cut(s) 625
CseI GACGC 2 cut(s) 81, 1155
Csp6I GTAC 3 cut(s) 694, 733, 797
CviAII CATG 2 cut(s) 529, 1165
CviQI GTAC 3 cut(s) 694, 733, 797
DdeI CTNAG 6 cut(s) 29, 223, 300, 380, 705, 710
DpnI GATC 2 cut(s) 265, 274
DpnII GATC 2 cut(s) 263, 272
DrdI GACNNNNNNGTC 1 cut(s) 91
DriI GACNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 2 cut(s) 406, 576
Eam1104I CTCTTC 1 cut(s) 661
Eam1105I GACNNNNNGTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 661
Ecl136II GAGCTC 1 cut(s) 709
Eco130I CCWWGG 2 cut(s) 800, 963
Eco24I GRGCYC 5 cut(s) 282, 371, 377, 393, 711
Eco31I GGTCTC 1 cut(s) 1247
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 709
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 2 cut(s) 59, 370
Eco91I GGTNACC 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 709
EcoNI CCTNNNNNAGG 1 cut(s) 790
EcoO109I RGGNCCY 1 cut(s) 278
EcoO65I GGTNACC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 392
EcoT14I CCWWGG 2 cut(s) 800, 963
EcoT38I GRGCYC 5 cut(s) 282, 371, 377, 393, 711
ErhI CCWWGG 2 cut(s) 800, 963
FaeI CATG 2 cut(s) 532, 1168
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 528, 1164
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 6 cut(s) 34, 65, 540, 674, 1117, 1216
FokI GGATG 4 cut(s) 178, 769, 855, 1013
FriOI GRGCYC 5 cut(s) 282, 371, 377, 393, 711
Fsp4HI GCNGC 6 cut(s) 34, 65, 540, 674, 1117, 1216
FspBI CTAG 5 cut(s) 143, 554, 677, 801, 876
FspI TGCGCA 1 cut(s) 854
GlaI GCGC 7 cut(s) 77, 100, 612, 854, 1043, 1058, 1088
GluI GCNGC 6 cut(s) 34, 65, 540, 674, 1117, 1216
GsuI CTGGAG 1 cut(s) 156
HaeII RGCGCY 2 cut(s) 79, 614
HaeIII GGCC 9 cut(s) 54, 280, 315, 345, 360, 375, 391, 408, 578
HapII CCGG 6 cut(s) 288, 312, 357, 387, 405, 626
HgaI GACGC 2 cut(s) 81, 1155
HhaI GCGC 7 cut(s) 78, 101, 613, 855, 1044, 1059, 1089
Hin1I GRCGYC 2 cut(s) 92, 1147
Hin1II CATG 2 cut(s) 532, 1168
Hin6I GCGC 7 cut(s) 76, 99, 611, 853, 1042, 1057, 1087
HinP1I GCGC 7 cut(s) 76, 99, 611, 853, 1042, 1057, 1087
HincII GTYRAC 1 cut(s) 1194
HindII GTYRAC 1 cut(s) 1194
HinfI GANTC 5 cut(s) 12, 322, 595, 779, 833
HpaII CCGG 6 cut(s) 288, 312, 357, 387, 405, 626
HphI GGTGA 5 cut(s) 14, 131, 343, 604, 1064
Hpy166II GTNNAC 1 cut(s) 1194
Hpy188III TCNNGA 6 cut(s) 135, 583, 646, 876, 1165, 1225
Hpy8I GTNNAC 1 cut(s) 1194
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 5 cut(s) 222, 246, 1091, 1229, 1232
HpyCH4III ACNGT 4 cut(s) 732, 994, 1079, 1123
HpyCH4IV ACGT 2 cut(s) 735, 1253
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 98, 366, 381, 852, 968, 1054
HpyF3I CTNAG 6 cut(s) 29, 223, 300, 380, 705, 710
HpySE526I ACGT 2 cut(s) 735, 1253
Hsp92I GRCGYC 2 cut(s) 92, 1147
Hsp92II CATG 2 cut(s) 532, 1168
HspAI GCGC 7 cut(s) 76, 99, 611, 853, 1042, 1057, 1087
KpnI GGTACC 2 cut(s) 697, 800
Kzo9I GATC 2 cut(s) 263, 272
LmnI GCTCC 3 cut(s) 389, 959, 1183
Lsp1109I GCAGC 5 cut(s) 45, 76, 660, 1128, 1202
LweI GCATC 2 cut(s) 691, 833
MaeI CTAG 5 cut(s) 143, 554, 677, 801, 876
MaeII ACGT 2 cut(s) 735, 1253
MaeIII GTNAC 5 cut(s) 93, 337, 463, 742, 754
MalI GATC 2 cut(s) 265, 274
MboI GATC 2 cut(s) 263, 272
MboII GAAGA 3 cut(s) 139, 675, 678
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 5 cut(s) 282, 371, 377, 393, 711
MluCI AATT 3 cut(s) 165, 283, 649
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 3 cut(s) 756, 840, 1202
MseI TTAA 3 cut(s) 473, 932, 1107
MslI CAYNNNNRTG 2 cut(s) 533, 1155
MspA1I CMGCKG 4 cut(s) 36, 198, 261, 412
MspI CCGG 6 cut(s) 288, 312, 357, 387, 405, 626
MspR9I CCNGG 2 cut(s) 388, 394
Mva1269I GAATGC 1 cut(s) 1276
MvaI CCWGG 1 cut(s) 394
MvnI CGCG 2 cut(s) 99, 656
MwoI GCNNNNNNNGC 7 cut(s) 73, 98, 366, 381, 852, 968, 1054
NciI CCSGG 1 cut(s) 388
NdeII GATC 2 cut(s) 263, 272
NlaIII CATG 2 cut(s) 532, 1168
NmuCI GTSAC 1 cut(s) 93
NsbI TGCGCA 1 cut(s) 854
PagI TCATGA 1 cut(s) 1164
PcsI WCGNNNNNNNCGW 1 cut(s) 732
PctI GAATGC 1 cut(s) 1276
PfeI GAWTC 4 cut(s) 12, 595, 779, 833
PflFI GACNNNGTC 2 cut(s) 424, 482
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 6 cut(s) 35, 66, 541, 675, 1118, 1217
Ple19I CGATCG 1 cut(s) 275
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 392
PspEI GGTNACC 1 cut(s) 463
PspGI CCWGG 1 cut(s) 392
PspOMI GGGCCC 3 cut(s) 278, 373, 389
PstNI CAGNNNCTG 2 cut(s) 704, 992
PsuI RGATCY 1 cut(s) 263
PsyI GACNNNGTC 2 cut(s) 424, 482
PvuI CGATCG 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 412
RsaI GTAC 3 cut(s) 695, 734, 798
RsaNI GTAC 3 cut(s) 694, 733, 797
RseI CAYNNNNRTG 2 cut(s) 533, 1155
SacI GAGCTC 1 cut(s) 711
SaqAI TTAA 3 cut(s) 473, 932, 1107
SatI GCNGC 6 cut(s) 34, 65, 540, 674, 1117, 1216
Sau3AI GATC 2 cut(s) 263, 272
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 2 cut(s) 388, 394
SduI GDGCHC 5 cut(s) 282, 371, 377, 393, 711
SfaNI GCATC 2 cut(s) 691, 833
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 533, 1155
Sse9I AATT 3 cut(s) 165, 283, 649
SsiI CCGC 8 cut(s) 36, 117, 198, 261, 461, 515, 539, 605
SspMI CTAG 5 cut(s) 143, 554, 677, 801, 876
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 2 cut(s) 386, 392
StyI CCWWGG 2 cut(s) 800, 963
TaaI ACNGT 4 cut(s) 732, 994, 1079, 1123
TaiI ACGT 2 cut(s) 738, 1256
TaqI TCGA 2 cut(s) 156, 428
TasI AATT 3 cut(s) 165, 283, 649
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 4 cut(s) 12, 595, 779, 833
Tru1I TTAA 3 cut(s) 473, 932, 1107
Tru9I TTAA 3 cut(s) 473, 932, 1107
TscAI CASTG 2 cut(s) 118, 1126
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 5 cut(s) 33, 64, 673, 1116, 1215
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 517
TspGWI ACGGA 4 cut(s) 256, 741, 762, 1196
TspRI CASTG 2 cut(s) 118, 1126
Tth111I GACNNNGTC 2 cut(s) 424, 482
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 790
XapI RAATTY 1 cut(s) 649
XbaI TCTAGA 1 cut(s) 875
XmaJI CCTAGG 1 cut(s) 800
XspI CTAG 5 cut(s) 143, 554, 677, 801, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.