Rmu_co8424019.1_g000001

membrane protein At1g16860-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8424019.1
OG0009605
Physical Location & Seq
Forward (+)
1 .. 1277
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8424019.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
agacgtgtggtagacttctacatctctgatttccaatctgggttgagagcattggttaagacaggctgtggagcaagggtgacaccttatgttgatgattcaattgtcattgatgtgaatcccgttaatgaagagttgtctccagagtttattaggtggttgagggagaggaacctttcaagtgatgatcgtgtgatgcagttgaaagaagggtacattaaagaaggaagcacagtcagtgtaatgggggtcgtccagagaaatgaaaatgtgttgatgattgttcctccacctgagccgatcacaacgggatgccaatgggccaaatgtatcttcccagctagccttgagggcatcgttttgagatgcgatgatgcatcaaagaatgatgtcataccagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.98

Weight (kDa)

4.85

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 12
AfaI GTAC 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 4
AgsI TTSAA 3 cut(s) 102, 180, 205
AjiI CACGTC 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 351
BmgBI CACGTC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 173
BmsI GCATC 6 cut(s) 186, 302, 356, 363, 364, 386
BmtI GCTAGC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bse1I ACTGG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 117
BseGI GGATG 1 cut(s) 317
BseJI GATNNNNATC 1 cut(s) 117
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 187, 300
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 173
BspOI GCTAGC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 398
BssMI GATC 2 cut(s) 187, 300
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 317
BstKTI GATC 2 cut(s) 190, 303
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 187, 300
BstMWI GCNNNNNNNGC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 384
BtrI CACGTC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 214
CviJI RGCY 5 cut(s) 66, 298, 323, 341, 345
CviKI_1 RGCY 5 cut(s) 66, 298, 323, 341, 345
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 189, 302
DpnII GATC 2 cut(s) 187, 300
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 379
FaiI YATR 2 cut(s) 90, 395
FblI GTMKAC 1 cut(s) 12
FokI GGATG 1 cut(s) 324
FspBI CTAG 1 cut(s) 342
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 323
HinfI GANTC 2 cut(s) 98, 118
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 143, 256
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 203, 218
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 4
HpyCH4V TGCA 2 cut(s) 199, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 4
Kzo9I GATC 2 cut(s) 187, 300
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 6 cut(s) 24, 48, 156, 269, 306, 351
LweI GCATC 6 cut(s) 186, 302, 356, 363, 364, 386
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 4
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 189, 302
MboI GATC 2 cut(s) 187, 300
MboII GAAGA 2 cut(s) 143, 325
MfeI CAATTG 1 cut(s) 102
MluCI AATT 1 cut(s) 102
MnlI CCTC 4 cut(s) 156, 162, 297, 343
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 3 cut(s) 57, 126, 219
MslI CAYNNNNRTG 1 cut(s) 113
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeII GATC 2 cut(s) 187, 300
NheI GCTAGC 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 379
PfeI GAWTC 2 cut(s) 98, 118
PspFI CCCAGC 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 321
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 3 cut(s) 57, 126, 219
Sau3AI GATC 2 cut(s) 187, 300
Sau96I GGNCC 1 cut(s) 321
SetI ASST 6 cut(s) 7, 88, 158, 177, 295, 343
SfaNI GCATC 6 cut(s) 186, 302, 356, 363, 364, 386
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 1 cut(s) 102
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 7
TasI AATT 1 cut(s) 102
TfiI GAWTC 2 cut(s) 98, 118
Tru1I TTAA 3 cut(s) 57, 126, 219
Tru9I TTAA 3 cut(s) 57, 126, 219
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 144, 279
TspRI CASTG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.