Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0019749

Physical Location & Seq

Genomic Coordinates Forward (+)

2220891 .. 2224338

Gene Structure 3448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1018000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGGAGAGGAGCAGGGAGATGGGCTTGAGTCCGCCAACGGCGGAAGAGATCTTCAGGTATTATAGTGCTCCGAGAACCAATGTCGTCCACTCCTTAACTAGCGTTATGCAGCTCAGACCATCACGATTCACCATTGTCACCCCATCACTGCCGTCGCGACCACCGAGGCCACATCACCGCCGTCGAAAACACTACCATACCATCATCCTGCAAAAGCTTAGAGAGAGAAAATATAACCATACCTGTGTGGTTGCTCTTCAAATTGGTGCATTATCAATGAATGGATCACGTCAGATCGTGTCAAAGGCTGGGCATCCAGCTGCTTTGCCCCTCTCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0005886 GO:0006109 GO:0006111 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009889 GO:0009987 GO:0010675 GO:0010830 GO:0010906 GO:0016020 GO:0016202 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033218 GO:0034641 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0048634 GO:0048641 GO:0050789 GO:0050793 GO:0050794 GO:0051147 GO:0051153 GO:0051239 GO:0062012 GO:0065007 GO:0070011 GO:0070012 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901861 GO:1902809 GO:2000026 GO:2001014

KEGG Pathways

Metabolic & Signaling

ko04614 ko05143 map04614 map05143

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

115

Amino Acids

13.05

Weight (kDa)

11.49

Isoelectric Point (pI)

66.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019749)

Species	Orthologous Gene IDs
malus_domestica	MD03G1071200.v1.1 MD06G1018000.v1.1 MD08G1049100.v1.1 MD11G1248100.v1.1 MD14G1169900.v1.1
pyrus_communis	pycom02g22110 pycom03g05060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	160
AciI	CCGC	3 cut(s)	35, 44, 181
AclWI	GGATC	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	263
AjiI	CACGTC	1 cut(s)	293
AluBI	AGCT	3 cut(s)	115, 220, 323
AluI	AGCT	3 cut(s)	115, 220, 323
Alw21I	GWGCWC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	112, 323
AsuHPI	GGTGA	3 cut(s)	124, 133, 170
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	124, 310
BccI	CCATC	4 cut(s)	16, 130, 154, 212
BceAI	ACGGC	3 cut(s)	57, 139, 168
BfaI	CTAG	1 cut(s)	102
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	2 cut(s)	113, 324
BlsI	GCNGC	2 cut(s)	114, 325
BmgBI	CACGTC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	207, 316
BseMII	CTCAG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	124, 310
BseYI	CCCAGC	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	51, 287, 297
Bsp68I	TCGCGA	1 cut(s)	160
BspACI	CCGC	3 cut(s)	35, 44, 181
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	3 cut(s)	51, 287, 297
Bst6I	CTCTTC	2 cut(s)	42, 264
BstDEI	CTNAG	2 cut(s)	116, 221
BstF5I	GGATG	2 cut(s)	207, 316
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	3 cut(s)	54, 290, 300
BstMBI	GATC	3 cut(s)	51, 287, 297
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	124, 310
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	207, 316
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	149
BtuMI	TCGCGA	1 cut(s)	160
CviJI	RGCY	6 cut(s)	27, 115, 172, 220, 311, 323
CviKI_1	RGCY	6 cut(s)	27, 115, 172, 220, 311, 323
DdeI	CTNAG	2 cut(s)	116, 221
DpnI	GATC	3 cut(s)	53, 289, 299
DpnII	GATC	3 cut(s)	51, 287, 297
Eam1104I	CTCTTC	2 cut(s)	42, 264
EarI	CTCTTC	2 cut(s)	42, 264
EciI	GGCGGA	2 cut(s)	24, 59
Eco57I	CTGAAG	1 cut(s)	40
FaiI	YATR	5 cut(s)	66, 110, 201, 237, 243
Fnu4HI	GCNGC	2 cut(s)	113, 324
FokI	GGATG	2 cut(s)	194, 303
Fsp4HI	GCNGC	2 cut(s)	113, 324
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	113, 324
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	31, 129
HphI	GGTGA	3 cut(s)	124, 133, 170
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	75, 119, 297, 344
Hpy188III	TCNNGA	2 cut(s)	126, 159
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	160, 189
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	112, 214, 272
HpyF3I	CTNAG	2 cut(s)	116, 221
HpySE526I	ACGT	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	51, 287, 297
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	12, 76
LpnPI	CCDG	5 cut(s)	43, 224, 259, 297, 333
Lsp1109I	GCAGC	2 cut(s)	124, 310
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	53, 289, 299
MboI	GATC	3 cut(s)	51, 287, 297
MboII	GAAGA	3 cut(s)	46, 59, 251
MflI	RGATCY	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	3 cut(s)	3, 162, 344
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	160
NdeII	GATC	3 cut(s)	51, 287, 297
NmuCI	GTSAC	1 cut(s)	139
NruI	TCGCGA	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	114, 325
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	113, 324
Sau3AI	GATC	3 cut(s)	51, 287, 297
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	6 cut(s)	62, 117, 222, 248, 295, 325
SfaNI	GCATC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	3 cut(s)	35, 44, 181
SspMI	CTAG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	112, 323
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	17, 296
TspRI	CASTG	1 cut(s)	156
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.